Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03322

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03320 and OHPLBJKB_03321 overlap by 4 nucleotidesOHPLBJKB_03321 and OHPLBJKB_03322 are separated by 9 nucleotidesOHPLBJKB_03322 and OHPLBJKB_03323 are separated by 17 nucleotidesOHPLBJKB_03323 and OHPLBJKB_03324 are separated by 1 nucleotides OHPLBJKB_03320: OHPLBJKB_03320 - Acetaldehyde dehydrogenase, at 3,464,261 to 3,465,211 _03320 OHPLBJKB_03321: OHPLBJKB_03321 - 2-keto-4-pentenoate hydratase, at 3,465,208 to 3,466,017 _03321 OHPLBJKB_03322: OHPLBJKB_03322 - 2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase, at 3,466,027 to 3,466,893 _03322 OHPLBJKB_03323: OHPLBJKB_03323 - 2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase, at 3,466,911 to 3,467,855 _03323 OHPLBJKB_03324: OHPLBJKB_03324 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 3,467,857 to 3,469,521 _03324 Position (kb) 3466 3467Strain fitness (log2 ratio) -2 -1 0 1 2at 3465.200 kb on - strandat 3465.205 kb on + strandat 3465.205 kb on + strandat 3465.206 kb on - strandat 3465.262 kb on + strandat 3465.262 kb on + strandat 3465.262 kb on + strandat 3465.262 kb on + strandat 3465.262 kb on + strandat 3465.263 kb on - strandat 3465.263 kb on - strandat 3465.263 kb on - strandat 3465.263 kb on - strandat 3465.263 kb on - strandat 3465.263 kb on - strandat 3465.339 kb on + strand, within OHPLBJKB_03321at 3465.339 kb on + strand, within OHPLBJKB_03321at 3465.339 kb on + strand, within OHPLBJKB_03321at 3465.339 kb on + strand, within OHPLBJKB_03321at 3465.339 kb on + strand, within OHPLBJKB_03321at 3465.340 kb on - strand, within OHPLBJKB_03321at 3465.340 kb on - strand, within OHPLBJKB_03321at 3465.453 kb on + strand, within OHPLBJKB_03321at 3465.527 kb on + strand, within OHPLBJKB_03321at 3465.527 kb on + strand, within OHPLBJKB_03321at 3465.527 kb on + strand, within OHPLBJKB_03321at 3465.527 kb on + strand, within OHPLBJKB_03321at 3465.527 kb on + strand, within OHPLBJKB_03321at 3465.528 kb on - strand, within OHPLBJKB_03321at 3465.528 kb on - strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.638 kb on + strand, within OHPLBJKB_03321at 3465.639 kb on - strand, within OHPLBJKB_03321at 3465.639 kb on - strand, within OHPLBJKB_03321at 3465.639 kb on - strand, within OHPLBJKB_03321at 3465.639 kb on - strand, within OHPLBJKB_03321at 3465.639 kb on - strand, within OHPLBJKB_03321at 3465.772 kb on + strand, within OHPLBJKB_03321at 3465.772 kb on + strand, within OHPLBJKB_03321at 3465.840 kb on + strand, within OHPLBJKB_03321at 3465.848 kb on - strand, within OHPLBJKB_03321at 3465.876 kb on - strand, within OHPLBJKB_03321at 3465.876 kb on - strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.886 kb on + strand, within OHPLBJKB_03321at 3465.887 kb on - strand, within OHPLBJKB_03321at 3465.887 kb on - strand, within OHPLBJKB_03321at 3465.887 kb on - strand, within OHPLBJKB_03321at 3465.902 kb on + strand, within OHPLBJKB_03321at 3465.903 kb on - strand, within OHPLBJKB_03321at 3466.005 kb on + strandat 3466.006 kb on - strandat 3466.006 kb on - strandat 3466.113 kb on + strandat 3466.272 kb on + strand, within OHPLBJKB_03322at 3466.308 kb on + strand, within OHPLBJKB_03322at 3466.308 kb on + strand, within OHPLBJKB_03322at 3466.309 kb on - strand, within OHPLBJKB_03322at 3466.309 kb on - strand, within OHPLBJKB_03322at 3466.309 kb on - strand, within OHPLBJKB_03322at 3466.368 kb on + strand, within OHPLBJKB_03322at 3466.428 kb on + strand, within OHPLBJKB_03322at 3466.432 kb on - strand, within OHPLBJKB_03322at 3466.453 kb on - strand, within OHPLBJKB_03322at 3466.539 kb on + strand, within OHPLBJKB_03322at 3466.540 kb on - strand, within OHPLBJKB_03322at 3466.540 kb on - strand, within OHPLBJKB_03322at 3466.540 kb on - strand, within OHPLBJKB_03322at 3466.540 kb on - strand, within OHPLBJKB_03322at 3466.642 kb on - strand, within OHPLBJKB_03322at 3466.749 kb on + strand, within OHPLBJKB_03322at 3466.750 kb on - strand, within OHPLBJKB_03322at 3466.843 kb on + strandat 3466.844 kb on - strandat 3466.844 kb on - strandat 3466.886 kb on + strandat 3466.887 kb on - strandat 3466.908 kb on + strandat 3466.909 kb on - strandat 3467.106 kb on + strand, within OHPLBJKB_03323at 3467.106 kb on + strand, within OHPLBJKB_03323at 3467.107 kb on - strand, within OHPLBJKB_03323at 3467.280 kb on - strand, within OHPLBJKB_03323at 3467.525 kb on + strand, within OHPLBJKB_03323at 3467.525 kb on + strand, within OHPLBJKB_03323at 3467.525 kb on + strand, within OHPLBJKB_03323at 3467.526 kb on - strand, within OHPLBJKB_03323at 3467.526 kb on - strand, within OHPLBJKB_03323at 3467.526 kb on - strand, within OHPLBJKB_03323at 3467.526 kb on - strand, within OHPLBJKB_03323at 3467.531 kb on - strand, within OHPLBJKB_03323at 3467.695 kb on + strand, within OHPLBJKB_03323at 3467.696 kb on - strand, within OHPLBJKB_03323at 3467.696 kb on - strand, within OHPLBJKB_03323at 3467.809 kb on + strandat 3467.810 kb on - strandat 3467.810 kb on - strandat 3467.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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3,465,200 - -1.9
3,465,205 + -1.2
3,465,205 + -0.1
3,465,206 - -0.5
3,465,262 + -0.0
3,465,262 + +1.7
3,465,262 + +0.2
3,465,262 + +0.4
3,465,262 + +0.6
3,465,263 - -1.3
3,465,263 - -0.8
3,465,263 - +0.1
3,465,263 - +0.9
3,465,263 - -0.1
3,465,263 - -0.7
3,465,339 + OHPLBJKB_03321 0.16 -0.0
3,465,339 + OHPLBJKB_03321 0.16 +0.4
3,465,339 + OHPLBJKB_03321 0.16 +1.0
3,465,339 + OHPLBJKB_03321 0.16 -0.3
3,465,339 + OHPLBJKB_03321 0.16 -0.4
3,465,340 - OHPLBJKB_03321 0.16 +1.0
3,465,340 - OHPLBJKB_03321 0.16 -0.2
3,465,453 + OHPLBJKB_03321 0.30 -0.6
3,465,527 + OHPLBJKB_03321 0.39 -0.2
3,465,527 + OHPLBJKB_03321 0.39 +0.5
3,465,527 + OHPLBJKB_03321 0.39 +0.3
3,465,527 + OHPLBJKB_03321 0.39 -1.4
3,465,527 + OHPLBJKB_03321 0.39 -1.4
3,465,528 - OHPLBJKB_03321 0.40 +1.6
3,465,528 - OHPLBJKB_03321 0.40 -0.6
3,465,638 + OHPLBJKB_03321 0.53 +0.0
3,465,638 + OHPLBJKB_03321 0.53 -1.6
3,465,638 + OHPLBJKB_03321 0.53 +0.6
3,465,638 + OHPLBJKB_03321 0.53 +1.4
3,465,638 + OHPLBJKB_03321 0.53 -1.5
3,465,638 + OHPLBJKB_03321 0.53 +0.7
3,465,638 + OHPLBJKB_03321 0.53 +0.8
3,465,638 + OHPLBJKB_03321 0.53 +0.2
3,465,638 + OHPLBJKB_03321 0.53 -0.9
3,465,639 - OHPLBJKB_03321 0.53 +0.6
3,465,639 - OHPLBJKB_03321 0.53 -0.2
3,465,639 - OHPLBJKB_03321 0.53 +0.6
3,465,639 - OHPLBJKB_03321 0.53 -1.2
3,465,639 - OHPLBJKB_03321 0.53 -1.0
3,465,772 + OHPLBJKB_03321 0.70 -1.7
3,465,772 + OHPLBJKB_03321 0.70 +1.8
3,465,840 + OHPLBJKB_03321 0.78 +1.3
3,465,848 - OHPLBJKB_03321 0.79 -0.8
3,465,876 - OHPLBJKB_03321 0.82 +0.1
3,465,876 - OHPLBJKB_03321 0.82 -0.2
3,465,886 + OHPLBJKB_03321 0.84 -0.9
3,465,886 + OHPLBJKB_03321 0.84 -0.9
3,465,886 + OHPLBJKB_03321 0.84 +0.8
3,465,886 + OHPLBJKB_03321 0.84 -0.1
3,465,886 + OHPLBJKB_03321 0.84 -0.1
3,465,886 + OHPLBJKB_03321 0.84 +0.8
3,465,887 - OHPLBJKB_03321 0.84 +0.1
3,465,887 - OHPLBJKB_03321 0.84 -1.5
3,465,887 - OHPLBJKB_03321 0.84 +0.1
3,465,902 + OHPLBJKB_03321 0.86 -0.3
3,465,903 - OHPLBJKB_03321 0.86 +0.7
3,466,005 + +0.1
3,466,006 - +0.4
3,466,006 - +0.9
3,466,113 + +1.6
3,466,272 + OHPLBJKB_03322 0.28 +0.1
3,466,308 + OHPLBJKB_03322 0.32 -1.0
3,466,308 + OHPLBJKB_03322 0.32 +0.4
3,466,309 - OHPLBJKB_03322 0.33 -0.0
3,466,309 - OHPLBJKB_03322 0.33 -0.2
3,466,309 - OHPLBJKB_03322 0.33 -0.9
3,466,368 + OHPLBJKB_03322 0.39 -0.2
3,466,428 + OHPLBJKB_03322 0.46 +0.6
3,466,432 - OHPLBJKB_03322 0.47 -0.3
3,466,453 - OHPLBJKB_03322 0.49 +0.0
3,466,539 + OHPLBJKB_03322 0.59 -0.6
3,466,540 - OHPLBJKB_03322 0.59 -0.1
3,466,540 - OHPLBJKB_03322 0.59 +0.6
3,466,540 - OHPLBJKB_03322 0.59 -0.0
3,466,540 - OHPLBJKB_03322 0.59 -1.2
3,466,642 - OHPLBJKB_03322 0.71 +0.9
3,466,749 + OHPLBJKB_03322 0.83 +0.0
3,466,750 - OHPLBJKB_03322 0.83 +0.2
3,466,843 + -2.3
3,466,844 - -0.3
3,466,844 - -0.6
3,466,886 + -0.6
3,466,887 - -0.4
3,466,908 + -0.5
3,466,909 - +0.3
3,467,106 + OHPLBJKB_03323 0.21 +0.3
3,467,106 + OHPLBJKB_03323 0.21 +0.1
3,467,107 - OHPLBJKB_03323 0.21 -2.0
3,467,280 - OHPLBJKB_03323 0.39 -0.5
3,467,525 + OHPLBJKB_03323 0.65 +0.1
3,467,525 + OHPLBJKB_03323 0.65 -1.4
3,467,525 + OHPLBJKB_03323 0.65 -1.1
3,467,526 - OHPLBJKB_03323 0.65 -0.4
3,467,526 - OHPLBJKB_03323 0.65 +0.7
3,467,526 - OHPLBJKB_03323 0.65 -1.0
3,467,526 - OHPLBJKB_03323 0.65 +0.4
3,467,531 - OHPLBJKB_03323 0.66 +1.0
3,467,695 + OHPLBJKB_03323 0.83 +0.3
3,467,696 - OHPLBJKB_03323 0.83 +0.2
3,467,696 - OHPLBJKB_03323 0.83 -0.9
3,467,809 + +0.2
3,467,810 - +1.0
3,467,810 - -0.6
3,467,855 + +0.9

Or see this region's nucleotide sequence