Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02034

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02033 and OHPLBJKB_02034 are separated by 226 nucleotidesOHPLBJKB_02034 and OHPLBJKB_02035 are separated by 159 nucleotidesOHPLBJKB_02035 and OHPLBJKB_02036 are separated by 428 nucleotides OHPLBJKB_02033: OHPLBJKB_02033 - Inner membrane transport protein YdiN, at 2,106,843 to 2,108,108 _02033 OHPLBJKB_02034: OHPLBJKB_02034 - Inner membrane transport protein YdiM, at 2,108,335 to 2,109,489 _02034 OHPLBJKB_02035: OHPLBJKB_02035 - hypothetical protein, at 2,109,649 to 2,110,005 _02035 OHPLBJKB_02036: OHPLBJKB_02036 - Putative transport protein YdiK, at 2,110,434 to 2,111,546 _02036 Position (kb) 2108 2109 2110Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2107.340 kb on - strand, within OHPLBJKB_02033at 2107.394 kb on - strand, within OHPLBJKB_02033at 2107.421 kb on - strand, within OHPLBJKB_02033at 2107.595 kb on + strand, within OHPLBJKB_02033at 2107.637 kb on - strand, within OHPLBJKB_02033at 2107.692 kb on + strand, within OHPLBJKB_02033at 2107.772 kb on + strand, within OHPLBJKB_02033at 2107.912 kb on - strand, within OHPLBJKB_02033at 2108.176 kb on + strandat 2108.692 kb on - strand, within OHPLBJKB_02034at 2108.692 kb on - strand, within OHPLBJKB_02034at 2108.742 kb on + strand, within OHPLBJKB_02034at 2108.763 kb on + strand, within OHPLBJKB_02034at 2108.817 kb on + strand, within OHPLBJKB_02034at 2108.818 kb on - strand, within OHPLBJKB_02034at 2108.818 kb on - strand, within OHPLBJKB_02034at 2108.822 kb on + strand, within OHPLBJKB_02034at 2108.877 kb on - strand, within OHPLBJKB_02034at 2108.896 kb on - strand, within OHPLBJKB_02034at 2108.898 kb on - strand, within OHPLBJKB_02034at 2108.903 kb on + strand, within OHPLBJKB_02034at 2108.903 kb on + strand, within OHPLBJKB_02034at 2108.905 kb on + strand, within OHPLBJKB_02034at 2108.905 kb on + strand, within OHPLBJKB_02034at 2109.007 kb on - strand, within OHPLBJKB_02034at 2109.033 kb on + strand, within OHPLBJKB_02034at 2109.039 kb on + strand, within OHPLBJKB_02034at 2109.040 kb on - strand, within OHPLBJKB_02034at 2109.040 kb on - strand, within OHPLBJKB_02034at 2109.305 kb on + strand, within OHPLBJKB_02034at 2109.305 kb on + strand, within OHPLBJKB_02034at 2109.306 kb on - strand, within OHPLBJKB_02034at 2109.327 kb on + strand, within OHPLBJKB_02034at 2109.328 kb on - strand, within OHPLBJKB_02034at 2109.383 kb on - strandat 2109.408 kb on + strandat 2109.408 kb on + strandat 2109.409 kb on - strandat 2109.557 kb on - strandat 2109.677 kb on + strandat 2109.677 kb on + strandat 2109.678 kb on - strandat 2109.679 kb on + strandat 2109.679 kb on + strandat 2109.799 kb on + strand, within OHPLBJKB_02035at 2109.799 kb on + strand, within OHPLBJKB_02035at 2110.039 kb on - strandat 2110.040 kb on + strandat 2110.085 kb on - strandat 2110.221 kb on - strandat 2110.254 kb on - strandat 2110.259 kb on + strandat 2110.259 kb on + strandat 2110.260 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
2,107,340 - OHPLBJKB_02033 0.39 +0.9
2,107,394 - OHPLBJKB_02033 0.44 +5.0
2,107,421 - OHPLBJKB_02033 0.46 -2.1
2,107,595 + OHPLBJKB_02033 0.59 +0.7
2,107,637 - OHPLBJKB_02033 0.63 -0.3
2,107,692 + OHPLBJKB_02033 0.67 +0.6
2,107,772 + OHPLBJKB_02033 0.73 -0.9
2,107,912 - OHPLBJKB_02033 0.84 -0.3
2,108,176 + +0.2
2,108,692 - OHPLBJKB_02034 0.31 -2.2
2,108,692 - OHPLBJKB_02034 0.31 -1.0
2,108,742 + OHPLBJKB_02034 0.35 +0.7
2,108,763 + OHPLBJKB_02034 0.37 -1.6
2,108,817 + OHPLBJKB_02034 0.42 +1.1
2,108,818 - OHPLBJKB_02034 0.42 +0.6
2,108,818 - OHPLBJKB_02034 0.42 -0.8
2,108,822 + OHPLBJKB_02034 0.42 -0.3
2,108,877 - OHPLBJKB_02034 0.47 +0.5
2,108,896 - OHPLBJKB_02034 0.49 -0.2
2,108,898 - OHPLBJKB_02034 0.49 -1.4
2,108,903 + OHPLBJKB_02034 0.49 -0.5
2,108,903 + OHPLBJKB_02034 0.49 -1.3
2,108,905 + OHPLBJKB_02034 0.49 +0.0
2,108,905 + OHPLBJKB_02034 0.49 +0.3
2,109,007 - OHPLBJKB_02034 0.58 -0.4
2,109,033 + OHPLBJKB_02034 0.60 +1.0
2,109,039 + OHPLBJKB_02034 0.61 +0.0
2,109,040 - OHPLBJKB_02034 0.61 -0.2
2,109,040 - OHPLBJKB_02034 0.61 -1.5
2,109,305 + OHPLBJKB_02034 0.84 +0.3
2,109,305 + OHPLBJKB_02034 0.84 +0.7
2,109,306 - OHPLBJKB_02034 0.84 +1.0
2,109,327 + OHPLBJKB_02034 0.86 +0.1
2,109,328 - OHPLBJKB_02034 0.86 +0.3
2,109,383 - -1.0
2,109,408 + +0.4
2,109,408 + +0.8
2,109,409 - +0.9
2,109,557 - -0.4
2,109,677 + -0.2
2,109,677 + -1.8
2,109,678 - +2.3
2,109,679 + +0.6
2,109,679 + +0.3
2,109,799 + OHPLBJKB_02035 0.42 +0.3
2,109,799 + OHPLBJKB_02035 0.42 -0.1
2,110,039 - -1.6
2,110,040 + +0.5
2,110,085 - -0.3
2,110,221 - -0.3
2,110,254 - +1.3
2,110,259 + +0.3
2,110,259 + +1.2
2,110,260 - -0.4

Or see this region's nucleotide sequence