Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01968

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01966 and OHPLBJKB_01967 are separated by 160 nucleotidesOHPLBJKB_01967 and OHPLBJKB_01968 are separated by 116 nucleotidesOHPLBJKB_01968 and OHPLBJKB_01969 are separated by 4 nucleotides OHPLBJKB_01966: OHPLBJKB_01966 - Protease 4, at 2,041,851 to 2,043,707 _01966 OHPLBJKB_01967: OHPLBJKB_01967 - Putative NAD(P)H nitroreductase YdjA, at 2,043,868 to 2,044,419 _01967 OHPLBJKB_01968: OHPLBJKB_01968 - Selenide, water dikinase, at 2,044,536 to 2,045,579 _01968 OHPLBJKB_01969: OHPLBJKB_01969 - DNA topoisomerase 3, at 2,045,584 to 2,047,545 _01969 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -2 -1 0 1 2at 2043.604 kb on - strandat 2043.614 kb on + strandat 2043.626 kb on + strandat 2043.626 kb on + strandat 2043.626 kb on + strandat 2043.626 kb on + strandat 2043.627 kb on - strandat 2043.627 kb on - strandat 2043.627 kb on - strandat 2043.630 kb on + strandat 2043.630 kb on + strandat 2043.631 kb on - strandat 2043.631 kb on - strandat 2043.686 kb on + strandat 2043.709 kb on + strandat 2043.710 kb on - strandat 2043.710 kb on - strandat 2043.710 kb on - strandat 2043.710 kb on - strandat 2043.710 kb on - strandat 2043.722 kb on + strandat 2043.722 kb on + strandat 2043.723 kb on - strandat 2043.723 kb on - strandat 2043.723 kb on - strandat 2043.748 kb on + strandat 2043.748 kb on + strandat 2043.748 kb on + strandat 2043.749 kb on - strandat 2043.749 kb on - strandat 2043.763 kb on + strandat 2043.779 kb on - strandat 2043.861 kb on + strandat 2043.984 kb on + strand, within OHPLBJKB_01967at 2043.985 kb on - strand, within OHPLBJKB_01967at 2043.985 kb on - strand, within OHPLBJKB_01967at 2043.985 kb on - strand, within OHPLBJKB_01967at 2044.343 kb on - strand, within OHPLBJKB_01967at 2044.371 kb on + strandat 2044.371 kb on + strandat 2044.372 kb on - strandat 2044.372 kb on - strandat 2044.407 kb on - strandat 2044.411 kb on + strandat 2044.412 kb on - strandat 2044.412 kb on - strandat 2044.421 kb on - strandat 2044.421 kb on - strandat 2044.480 kb on + strandat 2044.592 kb on + strandat 2044.699 kb on - strand, within OHPLBJKB_01968at 2044.746 kb on - strand, within OHPLBJKB_01968at 2044.760 kb on + strand, within OHPLBJKB_01968at 2044.914 kb on + strand, within OHPLBJKB_01968at 2044.915 kb on - strand, within OHPLBJKB_01968at 2045.289 kb on + strand, within OHPLBJKB_01968at 2045.290 kb on - strand, within OHPLBJKB_01968at 2045.325 kb on + strand, within OHPLBJKB_01968at 2045.325 kb on + strand, within OHPLBJKB_01968at 2045.325 kb on + strand, within OHPLBJKB_01968at 2045.325 kb on + strand, within OHPLBJKB_01968at 2045.326 kb on - strand, within OHPLBJKB_01968at 2045.326 kb on - strand, within OHPLBJKB_01968at 2045.326 kb on - strand, within OHPLBJKB_01968at 2045.330 kb on + strand, within OHPLBJKB_01968at 2045.330 kb on + strand, within OHPLBJKB_01968at 2045.330 kb on + strand, within OHPLBJKB_01968at 2045.330 kb on + strand, within OHPLBJKB_01968at 2045.331 kb on - strand, within OHPLBJKB_01968at 2045.331 kb on - strand, within OHPLBJKB_01968at 2045.363 kb on + strand, within OHPLBJKB_01968at 2045.364 kb on - strand, within OHPLBJKB_01968at 2045.808 kb on - strand, within OHPLBJKB_01969at 2045.808 kb on - strand, within OHPLBJKB_01969at 2045.838 kb on + strand, within OHPLBJKB_01969at 2045.839 kb on - strand, within OHPLBJKB_01969at 2045.839 kb on - strand, within OHPLBJKB_01969at 2045.839 kb on - strand, within OHPLBJKB_01969at 2046.050 kb on + strand, within OHPLBJKB_01969at 2046.097 kb on + strand, within OHPLBJKB_01969at 2046.108 kb on + strand, within OHPLBJKB_01969at 2046.121 kb on + strand, within OHPLBJKB_01969at 2046.121 kb on + strand, within OHPLBJKB_01969at 2046.121 kb on + strand, within OHPLBJKB_01969at 2046.291 kb on + strand, within OHPLBJKB_01969at 2046.353 kb on + strand, within OHPLBJKB_01969at 2046.353 kb on + strand, within OHPLBJKB_01969at 2046.353 kb on + strand, within OHPLBJKB_01969at 2046.353 kb on + strand, within OHPLBJKB_01969at 2046.418 kb on + strand, within OHPLBJKB_01969at 2046.419 kb on - strand, within OHPLBJKB_01969at 2046.419 kb on - strand, within OHPLBJKB_01969at 2046.525 kb on + strand, within OHPLBJKB_01969at 2046.558 kb on - strand, within OHPLBJKB_01969at 2046.558 kb on - strand, within OHPLBJKB_01969at 2046.558 kb on - strand, within OHPLBJKB_01969at 2046.565 kb on + strand, within OHPLBJKB_01969

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,043,604 - -0.1
2,043,614 + +1.3
2,043,626 + -0.4
2,043,626 + +0.1
2,043,626 + -0.1
2,043,626 + -0.7
2,043,627 - +0.2
2,043,627 - +1.3
2,043,627 - -0.4
2,043,630 + +2.3
2,043,630 + -1.0
2,043,631 - +1.5
2,043,631 - -1.0
2,043,686 + +0.0
2,043,709 + +0.1
2,043,710 - +0.5
2,043,710 - -1.3
2,043,710 - -0.6
2,043,710 - -1.1
2,043,710 - +0.4
2,043,722 + -0.1
2,043,722 + -0.7
2,043,723 - -1.8
2,043,723 - -1.8
2,043,723 - -2.6
2,043,748 + -0.7
2,043,748 + +0.1
2,043,748 + +0.0
2,043,749 - +0.7
2,043,749 - +0.1
2,043,763 + -1.9
2,043,779 - -1.2
2,043,861 + -0.1
2,043,984 + OHPLBJKB_01967 0.21 -0.4
2,043,985 - OHPLBJKB_01967 0.21 +0.6
2,043,985 - OHPLBJKB_01967 0.21 -0.9
2,043,985 - OHPLBJKB_01967 0.21 -0.0
2,044,343 - OHPLBJKB_01967 0.86 +0.4
2,044,371 + +0.7
2,044,371 + +0.0
2,044,372 - -0.0
2,044,372 - -0.1
2,044,407 - -0.5
2,044,411 + -1.0
2,044,412 - -0.1
2,044,412 - -0.5
2,044,421 - -1.3
2,044,421 - +1.4
2,044,480 + -1.2
2,044,592 + +0.3
2,044,699 - OHPLBJKB_01968 0.16 +0.3
2,044,746 - OHPLBJKB_01968 0.20 -1.1
2,044,760 + OHPLBJKB_01968 0.21 +0.3
2,044,914 + OHPLBJKB_01968 0.36 +0.6
2,044,915 - OHPLBJKB_01968 0.36 +0.7
2,045,289 + OHPLBJKB_01968 0.72 +1.8
2,045,290 - OHPLBJKB_01968 0.72 -0.6
2,045,325 + OHPLBJKB_01968 0.76 +0.3
2,045,325 + OHPLBJKB_01968 0.76 -0.0
2,045,325 + OHPLBJKB_01968 0.76 +0.3
2,045,325 + OHPLBJKB_01968 0.76 -0.9
2,045,326 - OHPLBJKB_01968 0.76 +0.6
2,045,326 - OHPLBJKB_01968 0.76 +0.2
2,045,326 - OHPLBJKB_01968 0.76 -1.8
2,045,330 + OHPLBJKB_01968 0.76 +1.4
2,045,330 + OHPLBJKB_01968 0.76 +0.7
2,045,330 + OHPLBJKB_01968 0.76 -0.6
2,045,330 + OHPLBJKB_01968 0.76 +0.6
2,045,331 - OHPLBJKB_01968 0.76 +0.6
2,045,331 - OHPLBJKB_01968 0.76 -0.0
2,045,363 + OHPLBJKB_01968 0.79 +0.0
2,045,364 - OHPLBJKB_01968 0.79 +1.2
2,045,808 - OHPLBJKB_01969 0.11 +1.3
2,045,808 - OHPLBJKB_01969 0.11 -0.5
2,045,838 + OHPLBJKB_01969 0.13 +1.2
2,045,839 - OHPLBJKB_01969 0.13 -0.4
2,045,839 - OHPLBJKB_01969 0.13 -2.5
2,045,839 - OHPLBJKB_01969 0.13 -0.0
2,046,050 + OHPLBJKB_01969 0.24 +0.3
2,046,097 + OHPLBJKB_01969 0.26 +0.1
2,046,108 + OHPLBJKB_01969 0.27 -0.6
2,046,121 + OHPLBJKB_01969 0.27 +1.2
2,046,121 + OHPLBJKB_01969 0.27 +0.9
2,046,121 + OHPLBJKB_01969 0.27 -0.7
2,046,291 + OHPLBJKB_01969 0.36 +0.1
2,046,353 + OHPLBJKB_01969 0.39 -1.4
2,046,353 + OHPLBJKB_01969 0.39 +0.1
2,046,353 + OHPLBJKB_01969 0.39 +0.5
2,046,353 + OHPLBJKB_01969 0.39 -0.4
2,046,418 + OHPLBJKB_01969 0.43 +1.4
2,046,419 - OHPLBJKB_01969 0.43 +0.3
2,046,419 - OHPLBJKB_01969 0.43 -2.2
2,046,525 + OHPLBJKB_01969 0.48 +0.4
2,046,558 - OHPLBJKB_01969 0.50 -0.4
2,046,558 - OHPLBJKB_01969 0.50 -0.7
2,046,558 - OHPLBJKB_01969 0.50 -0.3
2,046,565 + OHPLBJKB_01969 0.50 -1.0

Or see this region's nucleotide sequence