Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01756

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01755 and OHPLBJKB_01756 are separated by 342 nucleotidesOHPLBJKB_01756 and OHPLBJKB_01757 are separated by 235 nucleotidesOHPLBJKB_01757 and OHPLBJKB_01758 are separated by 0 nucleotides OHPLBJKB_01755: OHPLBJKB_01755 - Cytochrome b561, at 1,848,628 to 1,849,158 _01755 OHPLBJKB_01756: OHPLBJKB_01756 - Metal-binding protein ZinT, at 1,849,501 to 1,850,172 _01756 OHPLBJKB_01757: OHPLBJKB_01757 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 1,850,408 to 1,851,043 _01757 OHPLBJKB_01758: OHPLBJKB_01758 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 1,851,044 to 1,852,048 _01758 Position (kb) 1849 1850 1851Strain fitness (log2 ratio) -2 -1 0 1 2at 1848.660 kb on + strandat 1848.660 kb on + strandat 1848.663 kb on + strandat 1848.722 kb on + strand, within OHPLBJKB_01755at 1848.729 kb on + strand, within OHPLBJKB_01755at 1848.836 kb on + strand, within OHPLBJKB_01755at 1848.836 kb on + strand, within OHPLBJKB_01755at 1848.880 kb on + strand, within OHPLBJKB_01755at 1848.881 kb on - strand, within OHPLBJKB_01755at 1848.882 kb on + strand, within OHPLBJKB_01755at 1848.882 kb on + strand, within OHPLBJKB_01755at 1848.882 kb on + strand, within OHPLBJKB_01755at 1848.882 kb on + strand, within OHPLBJKB_01755at 1848.882 kb on + strand, within OHPLBJKB_01755at 1848.883 kb on - strand, within OHPLBJKB_01755at 1848.884 kb on + strand, within OHPLBJKB_01755at 1848.884 kb on + strand, within OHPLBJKB_01755at 1848.885 kb on - strand, within OHPLBJKB_01755at 1848.885 kb on - strand, within OHPLBJKB_01755at 1848.945 kb on + strand, within OHPLBJKB_01755at 1848.946 kb on - strand, within OHPLBJKB_01755at 1848.970 kb on + strand, within OHPLBJKB_01755at 1849.019 kb on + strand, within OHPLBJKB_01755at 1849.019 kb on + strand, within OHPLBJKB_01755at 1849.020 kb on - strand, within OHPLBJKB_01755at 1849.020 kb on - strand, within OHPLBJKB_01755at 1849.020 kb on - strand, within OHPLBJKB_01755at 1849.020 kb on - strand, within OHPLBJKB_01755at 1849.043 kb on + strand, within OHPLBJKB_01755at 1849.043 kb on + strand, within OHPLBJKB_01755at 1849.047 kb on + strand, within OHPLBJKB_01755at 1849.048 kb on - strand, within OHPLBJKB_01755at 1849.048 kb on - strand, within OHPLBJKB_01755at 1849.050 kb on + strand, within OHPLBJKB_01755at 1849.054 kb on - strand, within OHPLBJKB_01755at 1849.130 kb on + strandat 1849.306 kb on - strandat 1849.366 kb on - strandat 1849.377 kb on - strandat 1849.377 kb on - strandat 1849.377 kb on - strandat 1849.414 kb on - strandat 1849.414 kb on - strandat 1849.455 kb on + strandat 1849.469 kb on - strandat 1849.556 kb on + strandat 1849.556 kb on + strandat 1849.557 kb on - strandat 1849.840 kb on - strand, within OHPLBJKB_01756at 1849.865 kb on + strand, within OHPLBJKB_01756at 1850.054 kb on - strand, within OHPLBJKB_01756at 1850.106 kb on + strandat 1850.116 kb on + strandat 1850.117 kb on - strandat 1850.117 kb on - strandat 1850.175 kb on + strandat 1850.175 kb on + strandat 1850.176 kb on - strandat 1850.176 kb on - strandat 1850.176 kb on - strandat 1850.176 kb on - strandat 1850.177 kb on + strandat 1850.186 kb on + strandat 1850.187 kb on - strandat 1850.187 kb on - strandat 1850.323 kb on + strandat 1850.387 kb on + strandat 1850.388 kb on - strandat 1850.402 kb on - strandat 1850.409 kb on + strandat 1850.409 kb on + strandat 1850.411 kb on + strandat 1850.411 kb on + strandat 1850.411 kb on + strandat 1850.411 kb on + strandat 1850.411 kb on + strandat 1850.412 kb on - strandat 1850.412 kb on - strandat 1850.412 kb on - strandat 1850.508 kb on + strand, within OHPLBJKB_01757at 1850.508 kb on + strand, within OHPLBJKB_01757at 1850.509 kb on - strand, within OHPLBJKB_01757at 1850.509 kb on - strand, within OHPLBJKB_01757at 1850.551 kb on - strand, within OHPLBJKB_01757at 1850.555 kb on + strand, within OHPLBJKB_01757at 1850.590 kb on + strand, within OHPLBJKB_01757at 1850.652 kb on - strand, within OHPLBJKB_01757at 1850.690 kb on + strand, within OHPLBJKB_01757at 1850.690 kb on + strand, within OHPLBJKB_01757at 1850.694 kb on + strand, within OHPLBJKB_01757at 1850.708 kb on + strand, within OHPLBJKB_01757at 1850.709 kb on - strand, within OHPLBJKB_01757at 1850.721 kb on - strand, within OHPLBJKB_01757at 1850.734 kb on + strand, within OHPLBJKB_01757at 1850.761 kb on - strand, within OHPLBJKB_01757at 1850.798 kb on + strand, within OHPLBJKB_01757at 1850.799 kb on - strand, within OHPLBJKB_01757at 1850.799 kb on - strand, within OHPLBJKB_01757at 1850.823 kb on - strand, within OHPLBJKB_01757at 1850.917 kb on + strand, within OHPLBJKB_01757

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,848,660 + +0.2
1,848,660 + -0.7
1,848,663 + -1.3
1,848,722 + OHPLBJKB_01755 0.18 -0.1
1,848,729 + OHPLBJKB_01755 0.19 -1.7
1,848,836 + OHPLBJKB_01755 0.39 -0.8
1,848,836 + OHPLBJKB_01755 0.39 -0.3
1,848,880 + OHPLBJKB_01755 0.47 -0.4
1,848,881 - OHPLBJKB_01755 0.48 -0.1
1,848,882 + OHPLBJKB_01755 0.48 +1.6
1,848,882 + OHPLBJKB_01755 0.48 -0.5
1,848,882 + OHPLBJKB_01755 0.48 +2.1
1,848,882 + OHPLBJKB_01755 0.48 -0.2
1,848,882 + OHPLBJKB_01755 0.48 -1.5
1,848,883 - OHPLBJKB_01755 0.48 -0.3
1,848,884 + OHPLBJKB_01755 0.48 -0.1
1,848,884 + OHPLBJKB_01755 0.48 -1.5
1,848,885 - OHPLBJKB_01755 0.48 -0.4
1,848,885 - OHPLBJKB_01755 0.48 -0.3
1,848,945 + OHPLBJKB_01755 0.60 +1.2
1,848,946 - OHPLBJKB_01755 0.60 -0.9
1,848,970 + OHPLBJKB_01755 0.64 -1.0
1,849,019 + OHPLBJKB_01755 0.74 -0.3
1,849,019 + OHPLBJKB_01755 0.74 +0.5
1,849,020 - OHPLBJKB_01755 0.74 +1.1
1,849,020 - OHPLBJKB_01755 0.74 -0.7
1,849,020 - OHPLBJKB_01755 0.74 -0.9
1,849,020 - OHPLBJKB_01755 0.74 -0.5
1,849,043 + OHPLBJKB_01755 0.78 +0.8
1,849,043 + OHPLBJKB_01755 0.78 -0.5
1,849,047 + OHPLBJKB_01755 0.79 -0.1
1,849,048 - OHPLBJKB_01755 0.79 +0.0
1,849,048 - OHPLBJKB_01755 0.79 -0.0
1,849,050 + OHPLBJKB_01755 0.79 -0.6
1,849,054 - OHPLBJKB_01755 0.80 -0.5
1,849,130 + -0.2
1,849,306 - -1.5
1,849,366 - -1.2
1,849,377 - -0.1
1,849,377 - -0.9
1,849,377 - -0.9
1,849,414 - +0.3
1,849,414 - -0.0
1,849,455 + -1.5
1,849,469 - +0.5
1,849,556 + -1.4
1,849,556 + -0.3
1,849,557 - +0.0
1,849,840 - OHPLBJKB_01756 0.50 -0.3
1,849,865 + OHPLBJKB_01756 0.54 -0.2
1,850,054 - OHPLBJKB_01756 0.82 -1.4
1,850,106 + +0.3
1,850,116 + -0.8
1,850,117 - -1.2
1,850,117 - +0.1
1,850,175 + +1.6
1,850,175 + +0.5
1,850,176 - -0.4
1,850,176 - +1.0
1,850,176 - +1.5
1,850,176 - -0.2
1,850,177 + -0.6
1,850,186 + +0.7
1,850,187 - -0.5
1,850,187 - -0.4
1,850,323 + +0.2
1,850,387 + -1.0
1,850,388 - -0.3
1,850,402 - -0.3
1,850,409 + -0.2
1,850,409 + -0.5
1,850,411 + -0.2
1,850,411 + -0.1
1,850,411 + +0.4
1,850,411 + -1.0
1,850,411 + +0.1
1,850,412 - -0.4
1,850,412 - -0.5
1,850,412 - +1.4
1,850,508 + OHPLBJKB_01757 0.16 -0.4
1,850,508 + OHPLBJKB_01757 0.16 +0.3
1,850,509 - OHPLBJKB_01757 0.16 +0.1
1,850,509 - OHPLBJKB_01757 0.16 -2.1
1,850,551 - OHPLBJKB_01757 0.22 -0.3
1,850,555 + OHPLBJKB_01757 0.23 +1.7
1,850,590 + OHPLBJKB_01757 0.29 +0.6
1,850,652 - OHPLBJKB_01757 0.38 +0.7
1,850,690 + OHPLBJKB_01757 0.44 +0.7
1,850,690 + OHPLBJKB_01757 0.44 -0.4
1,850,694 + OHPLBJKB_01757 0.45 -1.4
1,850,708 + OHPLBJKB_01757 0.47 -1.3
1,850,709 - OHPLBJKB_01757 0.47 -0.4
1,850,721 - OHPLBJKB_01757 0.49 +0.5
1,850,734 + OHPLBJKB_01757 0.51 +0.9
1,850,761 - OHPLBJKB_01757 0.56 -1.2
1,850,798 + OHPLBJKB_01757 0.61 +0.2
1,850,799 - OHPLBJKB_01757 0.61 -0.1
1,850,799 - OHPLBJKB_01757 0.61 +0.2
1,850,823 - OHPLBJKB_01757 0.65 +1.7
1,850,917 + OHPLBJKB_01757 0.80 +0.9

Or see this region's nucleotide sequence