Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01526

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01525 and OHPLBJKB_01526 are separated by 148 nucleotidesOHPLBJKB_01526 and OHPLBJKB_01527 are separated by 27 nucleotides OHPLBJKB_01525: OHPLBJKB_01525 - Putative DNA repair helicase RadD, at 1,586,056 to 1,587,816 _01525 OHPLBJKB_01526: OHPLBJKB_01526 - Ribosomal small subunit pseudouridine synthase A, at 1,587,965 to 1,588,660 _01526 OHPLBJKB_01527: OHPLBJKB_01527 - Bicyclomycin resistance protein, at 1,588,688 to 1,589,878 _01527 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -2 -1 0 1 2at 1586.977 kb on - strand, within OHPLBJKB_01525at 1587.082 kb on - strand, within OHPLBJKB_01525at 1587.105 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.108 kb on + strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.109 kb on - strand, within OHPLBJKB_01525at 1587.163 kb on - strand, within OHPLBJKB_01525at 1587.163 kb on - strand, within OHPLBJKB_01525at 1587.249 kb on + strand, within OHPLBJKB_01525at 1587.249 kb on + strand, within OHPLBJKB_01525at 1587.249 kb on + strand, within OHPLBJKB_01525at 1587.249 kb on + strand, within OHPLBJKB_01525at 1587.250 kb on - strand, within OHPLBJKB_01525at 1587.250 kb on - strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.251 kb on + strand, within OHPLBJKB_01525at 1587.252 kb on - strand, within OHPLBJKB_01525at 1587.252 kb on - strand, within OHPLBJKB_01525at 1587.252 kb on - strand, within OHPLBJKB_01525at 1587.252 kb on - strand, within OHPLBJKB_01525at 1587.270 kb on - strand, within OHPLBJKB_01525at 1587.270 kb on - strand, within OHPLBJKB_01525at 1587.321 kb on - strand, within OHPLBJKB_01525at 1587.332 kb on + strand, within OHPLBJKB_01525at 1587.385 kb on + strand, within OHPLBJKB_01525at 1587.386 kb on - strand, within OHPLBJKB_01525at 1587.386 kb on - strand, within OHPLBJKB_01525at 1587.386 kb on - strand, within OHPLBJKB_01525at 1587.453 kb on + strand, within OHPLBJKB_01525at 1587.538 kb on + strand, within OHPLBJKB_01525at 1587.547 kb on - strand, within OHPLBJKB_01525at 1587.612 kb on - strand, within OHPLBJKB_01525at 1587.643 kb on - strandat 1587.708 kb on + strandat 1587.708 kb on + strandat 1587.708 kb on + strandat 1587.709 kb on - strandat 1587.747 kb on + strandat 1587.748 kb on - strandat 1587.748 kb on - strandat 1587.794 kb on + strandat 1587.826 kb on + strandat 1587.826 kb on + strandat 1587.827 kb on - strandat 1587.830 kb on + strandat 1587.830 kb on + strandat 1587.835 kb on + strandat 1587.836 kb on - strandat 1587.836 kb on - strandat 1587.843 kb on + strandat 1587.843 kb on + strandat 1587.844 kb on - strandat 1587.846 kb on + strandat 1587.846 kb on + strandat 1587.846 kb on + strandat 1587.846 kb on + strandat 1587.846 kb on + strandat 1587.847 kb on - strandat 1587.847 kb on - strandat 1587.847 kb on - strandat 1587.847 kb on - strandat 1587.850 kb on - strandat 1587.850 kb on - strandat 1587.850 kb on - strandat 1587.850 kb on - strandat 1587.881 kb on + strandat 1587.881 kb on + strandat 1587.882 kb on - strandat 1587.882 kb on - strandat 1587.884 kb on + strandat 1587.885 kb on - strandat 1587.885 kb on - strandat 1587.885 kb on - strandat 1587.947 kb on - strandat 1588.012 kb on + strandat 1588.069 kb on + strand, within OHPLBJKB_01526at 1588.110 kb on - strand, within OHPLBJKB_01526at 1588.176 kb on - strand, within OHPLBJKB_01526at 1588.217 kb on + strand, within OHPLBJKB_01526at 1588.218 kb on - strand, within OHPLBJKB_01526at 1588.276 kb on + strand, within OHPLBJKB_01526at 1588.277 kb on - strand, within OHPLBJKB_01526at 1588.327 kb on + strand, within OHPLBJKB_01526at 1588.328 kb on - strand, within OHPLBJKB_01526at 1588.328 kb on - strand, within OHPLBJKB_01526at 1588.358 kb on + strand, within OHPLBJKB_01526at 1588.383 kb on + strand, within OHPLBJKB_01526at 1588.383 kb on + strand, within OHPLBJKB_01526at 1588.448 kb on - strand, within OHPLBJKB_01526at 1588.576 kb on + strand, within OHPLBJKB_01526at 1588.576 kb on + strand, within OHPLBJKB_01526at 1588.588 kb on + strand, within OHPLBJKB_01526at 1588.606 kb on - strandat 1588.727 kb on - strandat 1588.768 kb on + strandat 1588.769 kb on - strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.772 kb on + strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.773 kb on - strandat 1588.826 kb on - strand, within OHPLBJKB_01527at 1588.843 kb on + strand, within OHPLBJKB_01527at 1588.843 kb on + strand, within OHPLBJKB_01527at 1588.844 kb on - strand, within OHPLBJKB_01527at 1588.844 kb on - strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.847 kb on + strand, within OHPLBJKB_01527at 1588.848 kb on - strand, within OHPLBJKB_01527at 1588.848 kb on - strand, within OHPLBJKB_01527at 1588.848 kb on - strand, within OHPLBJKB_01527at 1588.849 kb on + strand, within OHPLBJKB_01527at 1588.850 kb on - strand, within OHPLBJKB_01527at 1588.850 kb on - strand, within OHPLBJKB_01527at 1588.875 kb on + strand, within OHPLBJKB_01527at 1588.931 kb on - strand, within OHPLBJKB_01527at 1589.062 kb on + strand, within OHPLBJKB_01527at 1589.180 kb on + strand, within OHPLBJKB_01527at 1589.181 kb on - strand, within OHPLBJKB_01527at 1589.181 kb on - strand, within OHPLBJKB_01527at 1589.254 kb on - strand, within OHPLBJKB_01527at 1589.293 kb on + strand, within OHPLBJKB_01527at 1589.294 kb on - strand, within OHPLBJKB_01527at 1589.324 kb on - strand, within OHPLBJKB_01527at 1589.405 kb on + strand, within OHPLBJKB_01527at 1589.405 kb on + strand, within OHPLBJKB_01527at 1589.447 kb on + strand, within OHPLBJKB_01527at 1589.447 kb on + strand, within OHPLBJKB_01527at 1589.447 kb on + strand, within OHPLBJKB_01527at 1589.447 kb on + strand, within OHPLBJKB_01527at 1589.447 kb on + strand, within OHPLBJKB_01527at 1589.448 kb on - strand, within OHPLBJKB_01527at 1589.524 kb on - strand, within OHPLBJKB_01527at 1589.527 kb on + strand, within OHPLBJKB_01527at 1589.527 kb on + strand, within OHPLBJKB_01527at 1589.527 kb on + strand, within OHPLBJKB_01527at 1589.528 kb on - strand, within OHPLBJKB_01527at 1589.528 kb on - strand, within OHPLBJKB_01527at 1589.528 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527at 1589.558 kb on - strand, within OHPLBJKB_01527

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,586,977 - OHPLBJKB_01525 0.52 -0.8
1,587,082 - OHPLBJKB_01525 0.58 -0.0
1,587,105 + OHPLBJKB_01525 0.60 -0.6
1,587,108 + OHPLBJKB_01525 0.60 -0.5
1,587,108 + OHPLBJKB_01525 0.60 +0.6
1,587,108 + OHPLBJKB_01525 0.60 +0.4
1,587,108 + OHPLBJKB_01525 0.60 -1.5
1,587,108 + OHPLBJKB_01525 0.60 -0.1
1,587,108 + OHPLBJKB_01525 0.60 -0.5
1,587,109 - OHPLBJKB_01525 0.60 -0.0
1,587,109 - OHPLBJKB_01525 0.60 -0.1
1,587,109 - OHPLBJKB_01525 0.60 +0.3
1,587,109 - OHPLBJKB_01525 0.60 +0.4
1,587,109 - OHPLBJKB_01525 0.60 +1.1
1,587,109 - OHPLBJKB_01525 0.60 -2.2
1,587,109 - OHPLBJKB_01525 0.60 -1.6
1,587,109 - OHPLBJKB_01525 0.60 -1.3
1,587,109 - OHPLBJKB_01525 0.60 -0.0
1,587,163 - OHPLBJKB_01525 0.63 -2.2
1,587,163 - OHPLBJKB_01525 0.63 -0.3
1,587,249 + OHPLBJKB_01525 0.68 +1.0
1,587,249 + OHPLBJKB_01525 0.68 +0.8
1,587,249 + OHPLBJKB_01525 0.68 +0.5
1,587,249 + OHPLBJKB_01525 0.68 -0.6
1,587,250 - OHPLBJKB_01525 0.68 -0.1
1,587,250 - OHPLBJKB_01525 0.68 -0.9
1,587,251 + OHPLBJKB_01525 0.68 -0.3
1,587,251 + OHPLBJKB_01525 0.68 +0.5
1,587,251 + OHPLBJKB_01525 0.68 +0.1
1,587,251 + OHPLBJKB_01525 0.68 -0.0
1,587,251 + OHPLBJKB_01525 0.68 -0.9
1,587,251 + OHPLBJKB_01525 0.68 -0.3
1,587,252 - OHPLBJKB_01525 0.68 -0.2
1,587,252 - OHPLBJKB_01525 0.68 +0.6
1,587,252 - OHPLBJKB_01525 0.68 -0.1
1,587,252 - OHPLBJKB_01525 0.68 -0.3
1,587,270 - OHPLBJKB_01525 0.69 -1.1
1,587,270 - OHPLBJKB_01525 0.69 -0.7
1,587,321 - OHPLBJKB_01525 0.72 +0.7
1,587,332 + OHPLBJKB_01525 0.72 +0.4
1,587,385 + OHPLBJKB_01525 0.75 -1.3
1,587,386 - OHPLBJKB_01525 0.76 -0.0
1,587,386 - OHPLBJKB_01525 0.76 -0.5
1,587,386 - OHPLBJKB_01525 0.76 -1.0
1,587,453 + OHPLBJKB_01525 0.79 +0.0
1,587,538 + OHPLBJKB_01525 0.84 +0.1
1,587,547 - OHPLBJKB_01525 0.85 +1.7
1,587,612 - OHPLBJKB_01525 0.88 -0.3
1,587,643 - -0.4
1,587,708 + -1.2
1,587,708 + +0.2
1,587,708 + +0.1
1,587,709 - +0.6
1,587,747 + +0.1
1,587,748 - -2.1
1,587,748 - -1.3
1,587,794 + -0.5
1,587,826 + +1.6
1,587,826 + -0.5
1,587,827 - +0.3
1,587,830 + +0.3
1,587,830 + -0.7
1,587,835 + -1.2
1,587,836 - +0.7
1,587,836 - -0.4
1,587,843 + +1.3
1,587,843 + -0.3
1,587,844 - -0.3
1,587,846 + +1.2
1,587,846 + -0.3
1,587,846 + +0.6
1,587,846 + -0.1
1,587,846 + -2.0
1,587,847 - +0.3
1,587,847 - -0.3
1,587,847 - -1.0
1,587,847 - -0.2
1,587,850 - -0.4
1,587,850 - +0.1
1,587,850 - -1.1
1,587,850 - -0.3
1,587,881 + -0.6
1,587,881 + -0.7
1,587,882 - +0.1
1,587,882 - +0.4
1,587,884 + +2.5
1,587,885 - +0.7
1,587,885 - -0.1
1,587,885 - -0.3
1,587,947 - -0.1
1,588,012 + -1.7
1,588,069 + OHPLBJKB_01526 0.15 -0.1
1,588,110 - OHPLBJKB_01526 0.21 +1.0
1,588,176 - OHPLBJKB_01526 0.30 -1.0
1,588,217 + OHPLBJKB_01526 0.36 +0.5
1,588,218 - OHPLBJKB_01526 0.36 -0.7
1,588,276 + OHPLBJKB_01526 0.45 -0.3
1,588,277 - OHPLBJKB_01526 0.45 +0.5
1,588,327 + OHPLBJKB_01526 0.52 +0.1
1,588,328 - OHPLBJKB_01526 0.52 -0.3
1,588,328 - OHPLBJKB_01526 0.52 -0.1
1,588,358 + OHPLBJKB_01526 0.56 -1.1
1,588,383 + OHPLBJKB_01526 0.60 +0.5
1,588,383 + OHPLBJKB_01526 0.60 +0.3
1,588,448 - OHPLBJKB_01526 0.69 -1.4
1,588,576 + OHPLBJKB_01526 0.88 -1.3
1,588,576 + OHPLBJKB_01526 0.88 +0.5
1,588,588 + OHPLBJKB_01526 0.90 -0.5
1,588,606 - -1.2
1,588,727 - +0.6
1,588,768 + +0.7
1,588,769 - +0.4
1,588,772 + +1.1
1,588,772 + -0.1
1,588,772 + +0.2
1,588,772 + +0.3
1,588,772 + -0.1
1,588,772 + -0.0
1,588,772 + -1.5
1,588,773 - -0.0
1,588,773 - -0.9
1,588,773 - -2.0
1,588,773 - +0.6
1,588,773 - +0.6
1,588,773 - +0.7
1,588,773 - -0.9
1,588,773 - +0.6
1,588,773 - +0.3
1,588,773 - +0.3
1,588,773 - -1.0
1,588,773 - -0.2
1,588,826 - OHPLBJKB_01527 0.12 +0.4
1,588,843 + OHPLBJKB_01527 0.13 +0.1
1,588,843 + OHPLBJKB_01527 0.13 +0.3
1,588,844 - OHPLBJKB_01527 0.13 +1.6
1,588,844 - OHPLBJKB_01527 0.13 +0.3
1,588,847 + OHPLBJKB_01527 0.13 +0.4
1,588,847 + OHPLBJKB_01527 0.13 -1.0
1,588,847 + OHPLBJKB_01527 0.13 +0.5
1,588,847 + OHPLBJKB_01527 0.13 -0.9
1,588,847 + OHPLBJKB_01527 0.13 -0.7
1,588,847 + OHPLBJKB_01527 0.13 -0.4
1,588,847 + OHPLBJKB_01527 0.13 -0.8
1,588,847 + OHPLBJKB_01527 0.13 -2.0
1,588,847 + OHPLBJKB_01527 0.13 -1.0
1,588,847 + OHPLBJKB_01527 0.13 +0.6
1,588,847 + OHPLBJKB_01527 0.13 +0.2
1,588,847 + OHPLBJKB_01527 0.13 -0.7
1,588,847 + OHPLBJKB_01527 0.13 -0.1
1,588,848 - OHPLBJKB_01527 0.13 -1.6
1,588,848 - OHPLBJKB_01527 0.13 -0.5
1,588,848 - OHPLBJKB_01527 0.13 +1.0
1,588,849 + OHPLBJKB_01527 0.14 +0.7
1,588,850 - OHPLBJKB_01527 0.14 +0.7
1,588,850 - OHPLBJKB_01527 0.14 +0.6
1,588,875 + OHPLBJKB_01527 0.16 +0.8
1,588,931 - OHPLBJKB_01527 0.20 +1.7
1,589,062 + OHPLBJKB_01527 0.31 -0.1
1,589,180 + OHPLBJKB_01527 0.41 -0.9
1,589,181 - OHPLBJKB_01527 0.41 -0.3
1,589,181 - OHPLBJKB_01527 0.41 -0.3
1,589,254 - OHPLBJKB_01527 0.48 +0.7
1,589,293 + OHPLBJKB_01527 0.51 -0.6
1,589,294 - OHPLBJKB_01527 0.51 +0.4
1,589,324 - OHPLBJKB_01527 0.53 +0.4
1,589,405 + OHPLBJKB_01527 0.60 +0.0
1,589,405 + OHPLBJKB_01527 0.60 +0.1
1,589,447 + OHPLBJKB_01527 0.64 +0.1
1,589,447 + OHPLBJKB_01527 0.64 -1.5
1,589,447 + OHPLBJKB_01527 0.64 +0.3
1,589,447 + OHPLBJKB_01527 0.64 -0.3
1,589,447 + OHPLBJKB_01527 0.64 -0.6
1,589,448 - OHPLBJKB_01527 0.64 -0.4
1,589,524 - OHPLBJKB_01527 0.70 -0.1
1,589,527 + OHPLBJKB_01527 0.70 +0.2
1,589,527 + OHPLBJKB_01527 0.70 +0.4
1,589,527 + OHPLBJKB_01527 0.70 +0.8
1,589,528 - OHPLBJKB_01527 0.71 +0.4
1,589,528 - OHPLBJKB_01527 0.71 +0.0
1,589,528 - OHPLBJKB_01527 0.71 -0.6
1,589,558 - OHPLBJKB_01527 0.73 +0.9
1,589,558 - OHPLBJKB_01527 0.73 -0.5
1,589,558 - OHPLBJKB_01527 0.73 +1.6
1,589,558 - OHPLBJKB_01527 0.73 +0.2
1,589,558 - OHPLBJKB_01527 0.73 -1.3
1,589,558 - OHPLBJKB_01527 0.73 +1.4

Or see this region's nucleotide sequence