Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00716

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00714 and OHPLBJKB_00715 are separated by 31 nucleotidesOHPLBJKB_00715 and OHPLBJKB_00716 are separated by 45 nucleotidesOHPLBJKB_00716 and OHPLBJKB_00717 overlap by 1 nucleotidesOHPLBJKB_00717 and OHPLBJKB_00718 are separated by 11 nucleotides OHPLBJKB_00714: OHPLBJKB_00714 - hypothetical protein, at 732,129 to 732,827 _00714 OHPLBJKB_00715: OHPLBJKB_00715 - hypothetical protein, at 732,859 to 733,617 _00715 OHPLBJKB_00716: OHPLBJKB_00716 - hypothetical protein, at 733,663 to 735,012 _00716 OHPLBJKB_00717: OHPLBJKB_00717 - hypothetical protein, at 735,012 to 735,836 _00717 OHPLBJKB_00718: OHPLBJKB_00718 - putative protein YtfJ, at 735,848 to 736,408 _00718 Position (kb) 733 734 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 732.869 kb on + strandat 732.869 kb on + strandat 732.886 kb on - strandat 732.886 kb on - strandat 732.888 kb on + strandat 732.888 kb on + strandat 732.889 kb on - strandat 732.891 kb on + strandat 732.891 kb on + strandat 732.892 kb on - strandat 732.892 kb on - strandat 732.914 kb on - strandat 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.167 kb on + strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.168 kb on - strand, within OHPLBJKB_00715at 733.171 kb on + strand, within OHPLBJKB_00715at 733.171 kb on + strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.172 kb on - strand, within OHPLBJKB_00715at 733.202 kb on + strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.203 kb on - strand, within OHPLBJKB_00715at 733.282 kb on + strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.283 kb on - strand, within OHPLBJKB_00715at 733.286 kb on - strand, within OHPLBJKB_00715at 733.361 kb on + strand, within OHPLBJKB_00715at 733.361 kb on + strand, within OHPLBJKB_00715at 733.362 kb on - strand, within OHPLBJKB_00715at 733.394 kb on + strand, within OHPLBJKB_00715at 733.453 kb on + strand, within OHPLBJKB_00715at 733.454 kb on - strand, within OHPLBJKB_00715at 733.482 kb on + strand, within OHPLBJKB_00715at 733.483 kb on - strand, within OHPLBJKB_00715at 733.498 kb on + strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.499 kb on - strand, within OHPLBJKB_00715at 733.611 kb on - strandat 733.615 kb on + strandat 733.615 kb on + strandat 733.615 kb on + strandat 733.636 kb on + strandat 733.675 kb on - strandat 733.675 kb on - strandat 733.867 kb on - strand, within OHPLBJKB_00716at 733.867 kb on - strand, within OHPLBJKB_00716at 733.867 kb on - strand, within OHPLBJKB_00716at 733.869 kb on + strand, within OHPLBJKB_00716at 733.870 kb on - strand, within OHPLBJKB_00716at 733.870 kb on - strand, within OHPLBJKB_00716at 733.927 kb on - strand, within OHPLBJKB_00716at 734.015 kb on + strand, within OHPLBJKB_00716at 734.016 kb on - strand, within OHPLBJKB_00716at 734.039 kb on + strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.078 kb on - strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.159 kb on + strand, within OHPLBJKB_00716at 734.205 kb on - strand, within OHPLBJKB_00716at 734.212 kb on + strand, within OHPLBJKB_00716at 734.251 kb on + strand, within OHPLBJKB_00716at 734.252 kb on - strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.534 kb on + strand, within OHPLBJKB_00716at 734.570 kb on + strand, within OHPLBJKB_00716at 734.571 kb on - strand, within OHPLBJKB_00716at 734.705 kb on - strand, within OHPLBJKB_00716at 734.717 kb on - strand, within OHPLBJKB_00716at 734.787 kb on - strand, within OHPLBJKB_00716at 734.845 kb on + strand, within OHPLBJKB_00716at 734.852 kb on + strand, within OHPLBJKB_00716at 734.853 kb on - strand, within OHPLBJKB_00716at 734.943 kb on - strandat 734.955 kb on - strandat 734.986 kb on + strandat 734.986 kb on + strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.989 kb on - strandat 735.053 kb on - strandat 735.110 kb on + strand, within OHPLBJKB_00717at 735.111 kb on - strand, within OHPLBJKB_00717at 735.118 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.146 kb on + strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.157 kb on + strand, within OHPLBJKB_00717at 735.200 kb on - strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.264 kb on - strand, within OHPLBJKB_00717at 735.267 kb on + strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.282 kb on + strand, within OHPLBJKB_00717at 735.312 kb on + strand, within OHPLBJKB_00717at 735.316 kb on + strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.438 kb on + strand, within OHPLBJKB_00717at 735.439 kb on - strand, within OHPLBJKB_00717at 735.443 kb on - strand, within OHPLBJKB_00717at 735.471 kb on + strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.502 kb on + strand, within OHPLBJKB_00717at 735.503 kb on - strand, within OHPLBJKB_00717at 735.553 kb on + strand, within OHPLBJKB_00717at 735.572 kb on - strand, within OHPLBJKB_00717at 735.633 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.659 kb on + strand, within OHPLBJKB_00717at 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.763 kb on - strandat 735.806 kb on - strandat 735.833 kb on - strandat 735.878 kb on - strandat 735.944 kb on + strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.946 kb on + strand, within OHPLBJKB_00718at 735.947 kb on - strand, within OHPLBJKB_00718

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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732,869 + -0.8
732,869 + -0.3
732,886 - +0.0
732,886 - -1.4
732,888 + -1.8
732,888 + +1.1
732,889 - -1.4
732,891 + -1.9
732,891 + +0.5
732,892 - +0.3
732,892 - +0.6
732,914 - -0.2
733,167 + OHPLBJKB_00715 0.41 -0.0
733,167 + OHPLBJKB_00715 0.41 -1.9
733,167 + OHPLBJKB_00715 0.41 +1.1
733,167 + OHPLBJKB_00715 0.41 -0.8
733,167 + OHPLBJKB_00715 0.41 -1.4
733,167 + OHPLBJKB_00715 0.41 -0.0
733,168 - OHPLBJKB_00715 0.41 +0.6
733,168 - OHPLBJKB_00715 0.41 -0.7
733,168 - OHPLBJKB_00715 0.41 +0.5
733,168 - OHPLBJKB_00715 0.41 +0.1
733,168 - OHPLBJKB_00715 0.41 +0.7
733,171 + OHPLBJKB_00715 0.41 -0.1
733,171 + OHPLBJKB_00715 0.41 +0.2
733,172 - OHPLBJKB_00715 0.41 +0.6
733,172 - OHPLBJKB_00715 0.41 -0.3
733,172 - OHPLBJKB_00715 0.41 +0.4
733,202 + OHPLBJKB_00715 0.45 +0.7
733,203 - OHPLBJKB_00715 0.45 -2.9
733,203 - OHPLBJKB_00715 0.45 +0.1
733,203 - OHPLBJKB_00715 0.45 +0.5
733,282 + OHPLBJKB_00715 0.56 +0.8
733,283 - OHPLBJKB_00715 0.56 -1.5
733,283 - OHPLBJKB_00715 0.56 -1.0
733,283 - OHPLBJKB_00715 0.56 -1.2
733,286 - OHPLBJKB_00715 0.56 -0.4
733,361 + OHPLBJKB_00715 0.66 +0.5
733,361 + OHPLBJKB_00715 0.66 -0.1
733,362 - OHPLBJKB_00715 0.66 +1.0
733,394 + OHPLBJKB_00715 0.70 +0.1
733,453 + OHPLBJKB_00715 0.78 +0.2
733,454 - OHPLBJKB_00715 0.78 -0.8
733,482 + OHPLBJKB_00715 0.82 -0.9
733,483 - OHPLBJKB_00715 0.82 -0.0
733,498 + OHPLBJKB_00715 0.84 +1.1
733,499 - OHPLBJKB_00715 0.84 -0.4
733,499 - OHPLBJKB_00715 0.84 +0.2
733,499 - OHPLBJKB_00715 0.84 +0.6
733,611 - -1.2
733,615 + +0.5
733,615 + +0.3
733,615 + +0.2
733,636 + -0.3
733,675 - -0.6
733,675 - -0.6
733,867 - OHPLBJKB_00716 0.15 -0.4
733,867 - OHPLBJKB_00716 0.15 +0.4
733,867 - OHPLBJKB_00716 0.15 -0.1
733,869 + OHPLBJKB_00716 0.15 -1.8
733,870 - OHPLBJKB_00716 0.15 -1.9
733,870 - OHPLBJKB_00716 0.15 +0.4
733,927 - OHPLBJKB_00716 0.20 -0.6
734,015 + OHPLBJKB_00716 0.26 -1.4
734,016 - OHPLBJKB_00716 0.26 +0.3
734,039 + OHPLBJKB_00716 0.28 +0.1
734,040 - OHPLBJKB_00716 0.28 -1.3
734,040 - OHPLBJKB_00716 0.28 +0.9
734,078 - OHPLBJKB_00716 0.31 +2.0
734,135 + OHPLBJKB_00716 0.35 +0.3
734,135 + OHPLBJKB_00716 0.35 -0.5
734,159 + OHPLBJKB_00716 0.37 +0.1
734,205 - OHPLBJKB_00716 0.40 +0.2
734,212 + OHPLBJKB_00716 0.41 -0.4
734,251 + OHPLBJKB_00716 0.44 +1.2
734,252 - OHPLBJKB_00716 0.44 -0.7
734,281 + OHPLBJKB_00716 0.46 +1.1
734,281 + OHPLBJKB_00716 0.46 -0.3
734,281 + OHPLBJKB_00716 0.46 -0.3
734,281 + OHPLBJKB_00716 0.46 -0.7
734,281 + OHPLBJKB_00716 0.46 +0.4
734,281 + OHPLBJKB_00716 0.46 -0.3
734,281 + OHPLBJKB_00716 0.46 +0.3
734,282 - OHPLBJKB_00716 0.46 -1.5
734,282 - OHPLBJKB_00716 0.46 -0.0
734,282 - OHPLBJKB_00716 0.46 -0.4
734,282 - OHPLBJKB_00716 0.46 +1.0
734,282 - OHPLBJKB_00716 0.46 -0.0
734,488 - OHPLBJKB_00716 0.61 -0.7
734,488 - OHPLBJKB_00716 0.61 -2.5
734,534 + OHPLBJKB_00716 0.65 +0.6
734,570 + OHPLBJKB_00716 0.67 -0.6
734,571 - OHPLBJKB_00716 0.67 +1.3
734,705 - OHPLBJKB_00716 0.77 -0.9
734,717 - OHPLBJKB_00716 0.78 -0.8
734,787 - OHPLBJKB_00716 0.83 -1.1
734,845 + OHPLBJKB_00716 0.88 +0.4
734,852 + OHPLBJKB_00716 0.88 +1.5
734,853 - OHPLBJKB_00716 0.88 -1.3
734,943 - +0.6
734,955 - +0.5
734,986 + +0.7
734,986 + +0.4
734,987 - -0.0
734,987 - -0.6
734,987 - +1.6
734,989 - +0.4
735,053 - -0.1
735,110 + OHPLBJKB_00717 0.12 -0.9
735,111 - OHPLBJKB_00717 0.12 +0.6
735,118 + OHPLBJKB_00717 0.13 +1.2
735,125 + OHPLBJKB_00717 0.14 -0.6
735,125 + OHPLBJKB_00717 0.14 +0.4
735,125 + OHPLBJKB_00717 0.14 +0.3
735,146 + OHPLBJKB_00717 0.16 -0.3
735,151 - OHPLBJKB_00717 0.17 +1.3
735,151 - OHPLBJKB_00717 0.17 +0.0
735,157 + OHPLBJKB_00717 0.18 +0.2
735,200 - OHPLBJKB_00717 0.23 -0.1
735,263 + OHPLBJKB_00717 0.30 +0.5
735,263 + OHPLBJKB_00717 0.30 +0.1
735,264 - OHPLBJKB_00717 0.31 +0.2
735,267 + OHPLBJKB_00717 0.31 -0.3
735,268 - OHPLBJKB_00717 0.31 +0.8
735,268 - OHPLBJKB_00717 0.31 -0.3
735,268 - OHPLBJKB_00717 0.31 -0.5
735,268 - OHPLBJKB_00717 0.31 -0.6
735,282 + OHPLBJKB_00717 0.33 -0.7
735,312 + OHPLBJKB_00717 0.36 +0.4
735,316 + OHPLBJKB_00717 0.37 +0.1
735,317 - OHPLBJKB_00717 0.37 +1.0
735,317 - OHPLBJKB_00717 0.37 +1.8
735,404 + OHPLBJKB_00717 0.48 -2.1
735,404 + OHPLBJKB_00717 0.48 -1.1
735,438 + OHPLBJKB_00717 0.52 +0.1
735,439 - OHPLBJKB_00717 0.52 -0.6
735,443 - OHPLBJKB_00717 0.52 -0.6
735,471 + OHPLBJKB_00717 0.56 -0.5
735,472 - OHPLBJKB_00717 0.56 +0.2
735,472 - OHPLBJKB_00717 0.56 -0.1
735,502 + OHPLBJKB_00717 0.59 -1.1
735,503 - OHPLBJKB_00717 0.60 +1.2
735,553 + OHPLBJKB_00717 0.66 -0.6
735,572 - OHPLBJKB_00717 0.68 +0.1
735,633 - OHPLBJKB_00717 0.75 -1.6
735,638 - OHPLBJKB_00717 0.76 -0.5
735,638 - OHPLBJKB_00717 0.76 -0.5
735,659 + OHPLBJKB_00717 0.78 -0.3
735,762 + +0.0
735,762 + -0.6
735,762 + +0.2
735,762 + +0.7
735,763 - -0.2
735,806 - +1.2
735,833 - -0.1
735,878 - +0.4
735,944 + OHPLBJKB_00718 0.17 -0.0
735,945 - OHPLBJKB_00718 0.17 -0.1
735,945 - OHPLBJKB_00718 0.17 +0.6
735,945 - OHPLBJKB_00718 0.17 -1.1
735,945 - OHPLBJKB_00718 0.17 +0.1
735,945 - OHPLBJKB_00718 0.17 -0.1
735,946 + OHPLBJKB_00718 0.17 +0.0
735,947 - OHPLBJKB_00718 0.18 +0.6

Or see this region's nucleotide sequence