Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00541

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00540 and OHPLBJKB_00541 are separated by 80 nucleotidesOHPLBJKB_00541 and OHPLBJKB_00542 are separated by 8 nucleotides OHPLBJKB_00540: OHPLBJKB_00540 - hypothetical protein, at 555,520 to 556,527 _00540 OHPLBJKB_00541: OHPLBJKB_00541 - hypothetical protein, at 556,608 to 557,486 _00541 OHPLBJKB_00542: OHPLBJKB_00542 - putative protease YhbU, at 557,495 to 558,490 _00542 Position (kb) 556 557 558Strain fitness (log2 ratio) -1 0 1 2at 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.685 kb on - strand, within OHPLBJKB_00540at 555.708 kb on - strand, within OHPLBJKB_00540at 555.849 kb on + strand, within OHPLBJKB_00540at 555.852 kb on + strand, within OHPLBJKB_00540at 555.853 kb on - strand, within OHPLBJKB_00540at 555.872 kb on + strand, within OHPLBJKB_00540at 555.940 kb on - strand, within OHPLBJKB_00540at 556.004 kb on + strand, within OHPLBJKB_00540at 556.129 kb on - strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.146 kb on + strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.147 kb on - strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.230 kb on + strand, within OHPLBJKB_00540at 556.231 kb on - strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.233 kb on + strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.234 kb on - strand, within OHPLBJKB_00540at 556.275 kb on + strand, within OHPLBJKB_00540at 556.317 kb on + strand, within OHPLBJKB_00540at 556.339 kb on + strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.340 kb on - strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.374 kb on + strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.375 kb on - strand, within OHPLBJKB_00540at 556.397 kb on + strand, within OHPLBJKB_00540at 556.407 kb on - strand, within OHPLBJKB_00540at 556.518 kb on + strandat 556.557 kb on + strandat 556.560 kb on + strandat 556.561 kb on - strandat 556.576 kb on - strandat 556.580 kb on - strandat 556.601 kb on + strandat 556.601 kb on + strandat 556.645 kb on + strandat 556.652 kb on + strandat 556.804 kb on + strand, within OHPLBJKB_00541at 556.804 kb on + strand, within OHPLBJKB_00541at 556.805 kb on - strand, within OHPLBJKB_00541at 556.839 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.892 kb on + strand, within OHPLBJKB_00541at 556.893 kb on - strand, within OHPLBJKB_00541at 557.036 kb on + strand, within OHPLBJKB_00541at 557.078 kb on + strand, within OHPLBJKB_00541at 557.079 kb on - strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.109 kb on + strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.132 kb on - strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.183 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.236 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.389 kb on + strand, within OHPLBJKB_00541at 557.390 kb on - strand, within OHPLBJKB_00541at 557.480 kb on - strandat 557.480 kb on - strandat 557.605 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.652 kb on + strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.653 kb on - strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.708 kb on + strand, within OHPLBJKB_00542at 557.763 kb on + strand, within OHPLBJKB_00542at 557.950 kb on - strand, within OHPLBJKB_00542at 557.980 kb on + strand, within OHPLBJKB_00542at 557.981 kb on - strand, within OHPLBJKB_00542at 557.981 kb on - strand, within OHPLBJKB_00542at 558.017 kb on + strand, within OHPLBJKB_00542at 558.018 kb on - strand, within OHPLBJKB_00542at 558.105 kb on + strand, within OHPLBJKB_00542at 558.106 kb on - strand, within OHPLBJKB_00542at 558.106 kb on - strand, within OHPLBJKB_00542at 558.271 kb on - strand, within OHPLBJKB_00542at 558.398 kb on - strandat 558.408 kb on - strandat 558.416 kb on - strandat 558.417 kb on + strandat 558.417 kb on + strandat 558.417 kb on + strandat 558.418 kb on - strandat 558.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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555,685 - OHPLBJKB_00540 0.16 +0.1
555,685 - OHPLBJKB_00540 0.16 -0.0
555,685 - OHPLBJKB_00540 0.16 +1.3
555,708 - OHPLBJKB_00540 0.19 -1.3
555,849 + OHPLBJKB_00540 0.33 +1.7
555,852 + OHPLBJKB_00540 0.33 -0.1
555,853 - OHPLBJKB_00540 0.33 +0.1
555,872 + OHPLBJKB_00540 0.35 +0.6
555,940 - OHPLBJKB_00540 0.42 -0.7
556,004 + OHPLBJKB_00540 0.48 +1.0
556,129 - OHPLBJKB_00540 0.60 -0.7
556,146 + OHPLBJKB_00540 0.62 +0.1
556,146 + OHPLBJKB_00540 0.62 -1.0
556,147 - OHPLBJKB_00540 0.62 +0.7
556,147 - OHPLBJKB_00540 0.62 +0.8
556,230 + OHPLBJKB_00540 0.70 -0.5
556,230 + OHPLBJKB_00540 0.70 +1.3
556,230 + OHPLBJKB_00540 0.70 +1.1
556,230 + OHPLBJKB_00540 0.70 +0.4
556,230 + OHPLBJKB_00540 0.70 +0.2
556,231 - OHPLBJKB_00540 0.71 +0.3
556,233 + OHPLBJKB_00540 0.71 +1.2
556,233 + OHPLBJKB_00540 0.71 -0.3
556,233 + OHPLBJKB_00540 0.71 -0.2
556,233 + OHPLBJKB_00540 0.71 -0.6
556,233 + OHPLBJKB_00540 0.71 -0.6
556,234 - OHPLBJKB_00540 0.71 -0.0
556,234 - OHPLBJKB_00540 0.71 +0.3
556,275 + OHPLBJKB_00540 0.75 -0.5
556,317 + OHPLBJKB_00540 0.79 +0.1
556,339 + OHPLBJKB_00540 0.81 +0.4
556,340 - OHPLBJKB_00540 0.81 +0.2
556,340 - OHPLBJKB_00540 0.81 +1.8
556,374 + OHPLBJKB_00540 0.85 -0.6
556,374 + OHPLBJKB_00540 0.85 -0.4
556,375 - OHPLBJKB_00540 0.85 -0.0
556,375 - OHPLBJKB_00540 0.85 +1.1
556,397 + OHPLBJKB_00540 0.87 -0.3
556,407 - OHPLBJKB_00540 0.88 +0.6
556,518 + +0.2
556,557 + +0.2
556,560 + -0.5
556,561 - +0.2
556,576 - +0.4
556,580 - -0.1
556,601 + -0.5
556,601 + +0.4
556,645 + -0.6
556,652 + -0.7
556,804 + OHPLBJKB_00541 0.22 -0.7
556,804 + OHPLBJKB_00541 0.22 +0.5
556,805 - OHPLBJKB_00541 0.22 +0.7
556,839 + OHPLBJKB_00541 0.26 +0.4
556,892 + OHPLBJKB_00541 0.32 -0.8
556,892 + OHPLBJKB_00541 0.32 -0.4
556,893 - OHPLBJKB_00541 0.32 -0.4
557,036 + OHPLBJKB_00541 0.49 -1.5
557,078 + OHPLBJKB_00541 0.53 -0.2
557,079 - OHPLBJKB_00541 0.54 -0.8
557,109 + OHPLBJKB_00541 0.57 +2.1
557,109 + OHPLBJKB_00541 0.57 -0.9
557,132 - OHPLBJKB_00541 0.60 -1.0
557,132 - OHPLBJKB_00541 0.60 -1.3
557,132 - OHPLBJKB_00541 0.60 +0.1
557,183 + OHPLBJKB_00541 0.65 +0.6
557,183 + OHPLBJKB_00541 0.65 -1.0
557,236 + OHPLBJKB_00541 0.71 -0.0
557,236 + OHPLBJKB_00541 0.71 +0.4
557,389 + OHPLBJKB_00541 0.89 -0.7
557,389 + OHPLBJKB_00541 0.89 +1.1
557,390 - OHPLBJKB_00541 0.89 +0.5
557,480 - -0.8
557,480 - +1.1
557,605 + OHPLBJKB_00542 0.11 -0.9
557,652 + OHPLBJKB_00542 0.16 -0.3
557,652 + OHPLBJKB_00542 0.16 -0.0
557,652 + OHPLBJKB_00542 0.16 +0.1
557,652 + OHPLBJKB_00542 0.16 +0.8
557,653 - OHPLBJKB_00542 0.16 +0.3
557,653 - OHPLBJKB_00542 0.16 -0.1
557,653 - OHPLBJKB_00542 0.16 +0.5
557,708 + OHPLBJKB_00542 0.21 -0.1
557,708 + OHPLBJKB_00542 0.21 -1.1
557,708 + OHPLBJKB_00542 0.21 +1.3
557,763 + OHPLBJKB_00542 0.27 +1.1
557,950 - OHPLBJKB_00542 0.46 -0.4
557,980 + OHPLBJKB_00542 0.49 -0.1
557,981 - OHPLBJKB_00542 0.49 +0.3
557,981 - OHPLBJKB_00542 0.49 +0.6
558,017 + OHPLBJKB_00542 0.52 -0.0
558,018 - OHPLBJKB_00542 0.53 -0.3
558,105 + OHPLBJKB_00542 0.61 -0.5
558,106 - OHPLBJKB_00542 0.61 -0.0
558,106 - OHPLBJKB_00542 0.61 -0.0
558,271 - OHPLBJKB_00542 0.78 +1.1
558,398 - -0.5
558,408 - +0.3
558,416 - -1.1
558,417 + -0.2
558,417 + -0.0
558,417 + +0.5
558,418 - -0.6
558,418 - -0.2

Or see this region's nucleotide sequence