Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28310

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS629 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and OKFHMN_28310 overlap by 35 nucleotidesOKFHMN_28310 and nhaP2 are separated by 102 nucleotides OKFHMN_28300: tnp-IS629 - IS3 family IS629 transposase, at 5,429,108 to 5,429,434 tnp-IS629 OKFHMN_28305: tnp-IS3 - IS3 family transposase, at 5,429,434 to 5,430,321 tnp-IS3 OKFHMN_28310: OKFHMN_28310 - AMP nucleosidase, at 5,430,287 to 5,430,376 _28310 OKFHMN_28315: nhaP2 - potassium/proton antiporter, at 5,430,479 to 5,432,215 nhaP2 Position (kb) 5430 5431Strain fitness (log2 ratio) -1 0 1at 5430.416 kb on + strandat 5430.416 kb on + strandat 5430.533 kb on - strandat 5430.676 kb on - strand, within nhaP2at 5430.678 kb on - strand, within nhaP2at 5430.868 kb on + strand, within nhaP2at 5430.907 kb on + strand, within nhaP2

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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5,430,416 + -0.0
5,430,416 + +0.2
5,430,533 - +0.8
5,430,676 - nhaP2 OKFHMN_28315 0.11 -1.1
5,430,678 - nhaP2 OKFHMN_28315 0.11 +1.2
5,430,868 + nhaP2 OKFHMN_28315 0.22 -0.1
5,430,907 + nhaP2 OKFHMN_28315 0.25 +0.2

Or see this region's nucleotide sequence