Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfE and OKFHMN_27780 are separated by 198 nucleotides OKFHMN_27780 and ynfC are separated by 71 nucleotides ynfC and speG are separated by 2 nucleotides speG and ynfB are separated by 34 nucleotides
OKFHMN_27775: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 5,350,123 to 5,352,549
ynfE
OKFHMN_27780: OKFHMN_27780 - DUF1161 domain-containing protein, at 5,352,748 to 5,353,053
_27780
OKFHMN_27785: ynfC - YnfC family lipoprotein, at 5,353,125 to 5,353,871
ynfC
OKFHMN_27790: speG - spermidine N1-acetyltransferase, at 5,353,874 to 5,354,434
speG
OKFHMN_27795: ynfB - DUF1283 domain-containing protein, at 5,354,469 to 5,354,810
ynfB
Position (kb) 5353
5354 Strain fitness (log2 ratio) -1
0
1
2 at 5352.664 kb on - strand at 5352.671 kb on + strand at 5352.680 kb on + strand at 5352.698 kb on + strand at 5352.698 kb on + strand at 5352.908 kb on - strand, within OKFHMN_27780 at 5352.958 kb on - strand, within OKFHMN_27780 at 5353.514 kb on - strand, within ynfC at 5353.739 kb on + strand, within ynfC at 5354.081 kb on - strand, within speG at 5354.380 kb on - strand at 5354.562 kb on - strand, within ynfB at 5354.825 kb on - strand at 5354.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 5,352,664 - -1.1 5,352,671 + +1.2 5,352,680 + +0.9 5,352,698 + +0.2 5,352,698 + +1.8 5,352,908 - OKFHMN_27780 0.52 -0.4 5,352,958 - OKFHMN_27780 0.69 -0.2 5,353,514 - ynfC OKFHMN_27785 0.52 -0.3 5,353,739 + ynfC OKFHMN_27785 0.82 +0.2 5,354,081 - speG OKFHMN_27790 0.37 +0.5 5,354,380 - -0.8 5,354,562 - ynfB OKFHMN_27795 0.27 -1.1 5,354,825 - +1.2 5,354,835 - +0.2
Or see this region's nucleotide sequence