Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmE and chbB are separated by 299 nucleotides chbB and chbC are separated by 84 nucleotides chbC and chbA are separated by 50 nucleotides chbA and chbR are separated by 10 nucleotides
OKFHMN_26955: osmE - osmotically-inducible lipoprotein OsmE, at 5,188,651 to 5,188,989
osmE
OKFHMN_26960: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 5,189,289 to 5,189,609
chbB
OKFHMN_26965: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 5,189,694 to 5,191,052
chbC
OKFHMN_26970: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 5,191,103 to 5,191,453
chbA
OKFHMN_26975: chbR - transcriptional regulator ChbR, at 5,191,464 to 5,192,303
chbR
Position (kb) 5189
5190
5191
5192 Strain fitness (log2 ratio) -1
0
1
2 at 5188.745 kb on + strand, within osmE at 5188.897 kb on + strand, within osmE at 5189.131 kb on + strand at 5189.163 kb on + strand at 5189.288 kb on + strand at 5189.474 kb on + strand, within chbB at 5189.950 kb on + strand, within chbC at 5190.086 kb on + strand, within chbC at 5190.229 kb on + strand, within chbC at 5190.522 kb on + strand, within chbC at 5190.648 kb on - strand, within chbC at 5190.822 kb on + strand, within chbC at 5190.822 kb on + strand, within chbC at 5190.833 kb on + strand, within chbC at 5191.174 kb on + strand, within chbA at 5191.209 kb on - strand, within chbA at 5192.043 kb on - strand, within chbR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 5,188,745 + osmE OKFHMN_26955 0.28 -0.1 5,188,897 + osmE OKFHMN_26955 0.73 -1.0 5,189,131 + +2.3 5,189,163 + +0.5 5,189,288 + -0.1 5,189,474 + chbB OKFHMN_26960 0.58 +1.3 5,189,950 + chbC OKFHMN_26965 0.19 +0.4 5,190,086 + chbC OKFHMN_26965 0.29 +0.2 5,190,229 + chbC OKFHMN_26965 0.39 -0.8 5,190,522 + chbC OKFHMN_26965 0.61 -0.5 5,190,648 - chbC OKFHMN_26965 0.70 -0.3 5,190,822 + chbC OKFHMN_26965 0.83 -1.7 5,190,822 + chbC OKFHMN_26965 0.83 -0.4 5,190,833 + chbC OKFHMN_26965 0.84 -0.0 5,191,174 + chbA OKFHMN_26970 0.20 +0.2 5,191,209 - chbA OKFHMN_26970 0.30 -0.0 5,192,043 - chbR OKFHMN_26975 0.69 +1.3
Or see this region's nucleotide sequence