Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeS and OKFHMN_25060 are separated by 14 nucleotides OKFHMN_25060 and OKFHMN_25065 are separated by 81 nucleotides OKFHMN_25065 and OKFHMN_25070 are separated by 220 nucleotides OKFHMN_25070 and OKFHMN_25075 are separated by 15 nucleotides
OKFHMN_25055: yeeS - UPF0758 protein YeeS, at 4,863,763 to 4,864,239
yeeS
OKFHMN_25060: OKFHMN_25060 - restriction endonuclease, at 4,864,254 to 4,864,733
_25060
OKFHMN_25065: OKFHMN_25065 - DUF932 domain-containing protein, at 4,864,815 to 4,865,636
_25065
OKFHMN_25070: OKFHMN_25070 - hypothetical protein, at 4,865,857 to 4,866,267
_25070
OKFHMN_25075: OKFHMN_25075 - hypothetical protein, at 4,866,283 to 4,866,966
_25075
Position (kb) 4864
4865
4866 Strain fitness (log2 ratio) -2
-1
0
1 at 4864.370 kb on - strand, within OKFHMN_25060 at 4864.446 kb on + strand, within OKFHMN_25060 at 4864.488 kb on - strand, within OKFHMN_25060 at 4864.691 kb on + strand at 4865.202 kb on + strand, within OKFHMN_25065 at 4865.203 kb on - strand, within OKFHMN_25065 at 4865.300 kb on - strand, within OKFHMN_25065 at 4865.310 kb on - strand, within OKFHMN_25065 at 4865.497 kb on + strand, within OKFHMN_25065 at 4865.497 kb on + strand, within OKFHMN_25065 at 4865.550 kb on + strand, within OKFHMN_25065 at 4865.551 kb on - strand, within OKFHMN_25065 at 4865.637 kb on - strand at 4865.637 kb on - strand at 4865.676 kb on + strand at 4865.828 kb on - strand at 4865.918 kb on - strand, within OKFHMN_25070 at 4866.045 kb on - strand, within OKFHMN_25070 at 4866.045 kb on - strand, within OKFHMN_25070 at 4866.045 kb on - strand, within OKFHMN_25070 at 4866.374 kb on - strand, within OKFHMN_25075 at 4866.419 kb on + strand, within OKFHMN_25075 at 4866.531 kb on + strand, within OKFHMN_25075 at 4866.603 kb on + strand, within OKFHMN_25075 at 4866.618 kb on - strand, within OKFHMN_25075
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,864,370 - OKFHMN_25060 0.24 +0.0 4,864,446 + OKFHMN_25060 0.40 +0.3 4,864,488 - OKFHMN_25060 0.49 -0.0 4,864,691 + -2.3 4,865,202 + OKFHMN_25065 0.47 -0.4 4,865,203 - OKFHMN_25065 0.47 +0.1 4,865,300 - OKFHMN_25065 0.59 +1.3 4,865,310 - OKFHMN_25065 0.60 +0.1 4,865,497 + OKFHMN_25065 0.83 +0.2 4,865,497 + OKFHMN_25065 0.83 +1.3 4,865,550 + OKFHMN_25065 0.89 -1.6 4,865,551 - OKFHMN_25065 0.90 +0.5 4,865,637 - +0.6 4,865,637 - -0.1 4,865,676 + -0.7 4,865,828 - +0.0 4,865,918 - OKFHMN_25070 0.15 -0.5 4,866,045 - OKFHMN_25070 0.46 +0.2 4,866,045 - OKFHMN_25070 0.46 +0.3 4,866,045 - OKFHMN_25070 0.46 -0.2 4,866,374 - OKFHMN_25075 0.13 +1.0 4,866,419 + OKFHMN_25075 0.20 +1.3 4,866,531 + OKFHMN_25075 0.36 +1.3 4,866,603 + OKFHMN_25075 0.47 -0.1 4,866,618 - OKFHMN_25075 0.49 -0.4
Or see this region's nucleotide sequence