Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ypdE and ypdC are separated by 2 nucleotides ypdC and ypdB are separated by 12 nucleotides ypdB and ypdA are separated by 14 nucleotides
OKFHMN_22350: ypdE - aminopeptidase, at 4,341,961 to 4,344,456
ypdE
OKFHMN_22355: ypdC - Uncharacterized HTH-type transcriptional regulator YpdC, at 4,344,459 to 4,345,316
ypdC
OKFHMN_22360: ypdB - two-component system response regulator YpdB, at 4,345,329 to 4,346,063
ypdB
OKFHMN_22365: ypdA - two-component system sensor histidine kinase YpdA, at 4,346,078 to 4,347,775
ypdA
Position (kb) 4344
4345
4346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4343.560 kb on - strand, within ypdE at 4343.596 kb on + strand, within ypdE at 4343.596 kb on + strand, within ypdE at 4343.596 kb on + strand, within ypdE at 4343.597 kb on - strand, within ypdE at 4343.597 kb on - strand, within ypdE at 4343.597 kb on - strand, within ypdE at 4343.685 kb on + strand, within ypdE at 4343.697 kb on - strand, within ypdE at 4343.705 kb on + strand, within ypdE at 4343.705 kb on + strand, within ypdE at 4343.705 kb on + strand, within ypdE at 4343.707 kb on + strand, within ypdE at 4343.708 kb on - strand, within ypdE at 4343.710 kb on - strand, within ypdE at 4343.751 kb on - strand, within ypdE at 4343.754 kb on + strand, within ypdE at 4343.754 kb on + strand, within ypdE at 4343.755 kb on - strand, within ypdE at 4343.978 kb on + strand, within ypdE at 4344.055 kb on - strand, within ypdE at 4344.632 kb on - strand, within ypdC at 4344.736 kb on + strand, within ypdC at 4344.736 kb on + strand, within ypdC at 4344.737 kb on - strand, within ypdC at 4344.756 kb on - strand, within ypdC at 4344.810 kb on - strand, within ypdC at 4344.843 kb on + strand, within ypdC at 4345.032 kb on + strand, within ypdC at 4345.033 kb on - strand, within ypdC at 4345.062 kb on + strand, within ypdC at 4345.181 kb on + strand, within ypdC at 4345.185 kb on + strand, within ypdC at 4345.186 kb on - strand, within ypdC at 4345.342 kb on - strand at 4345.415 kb on - strand, within ypdB at 4345.415 kb on - strand, within ypdB at 4345.422 kb on - strand, within ypdB at 4345.424 kb on + strand, within ypdB at 4345.425 kb on - strand, within ypdB at 4345.425 kb on - strand, within ypdB at 4345.540 kb on - strand, within ypdB at 4345.544 kb on - strand, within ypdB at 4345.544 kb on - strand, within ypdB at 4345.560 kb on - strand, within ypdB at 4345.562 kb on - strand, within ypdB at 4345.597 kb on + strand, within ypdB at 4345.597 kb on + strand, within ypdB at 4345.598 kb on - strand, within ypdB at 4345.646 kb on + strand, within ypdB at 4345.668 kb on + strand, within ypdB at 4345.756 kb on + strand, within ypdB at 4345.764 kb on + strand, within ypdB at 4345.932 kb on - strand, within ypdB at 4346.092 kb on + strand at 4346.092 kb on + strand at 4346.185 kb on - strand at 4346.185 kb on - strand at 4346.185 kb on - strand at 4346.189 kb on + strand at 4346.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,343,560 - ypdE OKFHMN_22350 0.64 -1.1 4,343,596 + ypdE OKFHMN_22350 0.66 +1.5 4,343,596 + ypdE OKFHMN_22350 0.66 -0.1 4,343,596 + ypdE OKFHMN_22350 0.66 -0.4 4,343,597 - ypdE OKFHMN_22350 0.66 -1.5 4,343,597 - ypdE OKFHMN_22350 0.66 -0.2 4,343,597 - ypdE OKFHMN_22350 0.66 +1.1 4,343,685 + ypdE OKFHMN_22350 0.69 +0.9 4,343,697 - ypdE OKFHMN_22350 0.70 +1.1 4,343,705 + ypdE OKFHMN_22350 0.70 -1.1 4,343,705 + ypdE OKFHMN_22350 0.70 -2.0 4,343,705 + ypdE OKFHMN_22350 0.70 -0.2 4,343,707 + ypdE OKFHMN_22350 0.70 +0.9 4,343,708 - ypdE OKFHMN_22350 0.70 +0.2 4,343,710 - ypdE OKFHMN_22350 0.70 +0.9 4,343,751 - ypdE OKFHMN_22350 0.72 +0.3 4,343,754 + ypdE OKFHMN_22350 0.72 -1.8 4,343,754 + ypdE OKFHMN_22350 0.72 +0.3 4,343,755 - ypdE OKFHMN_22350 0.72 -0.1 4,343,978 + ypdE OKFHMN_22350 0.81 +0.8 4,344,055 - ypdE OKFHMN_22350 0.84 -0.4 4,344,632 - ypdC OKFHMN_22355 0.20 +0.1 4,344,736 + ypdC OKFHMN_22355 0.32 +0.1 4,344,736 + ypdC OKFHMN_22355 0.32 +0.5 4,344,737 - ypdC OKFHMN_22355 0.32 +0.7 4,344,756 - ypdC OKFHMN_22355 0.35 +1.1 4,344,810 - ypdC OKFHMN_22355 0.41 -1.5 4,344,843 + ypdC OKFHMN_22355 0.45 -0.7 4,345,032 + ypdC OKFHMN_22355 0.67 -0.5 4,345,033 - ypdC OKFHMN_22355 0.67 -0.1 4,345,062 + ypdC OKFHMN_22355 0.70 -0.4 4,345,181 + ypdC OKFHMN_22355 0.84 -0.5 4,345,185 + ypdC OKFHMN_22355 0.85 -0.5 4,345,186 - ypdC OKFHMN_22355 0.85 -0.4 4,345,342 - -0.2 4,345,415 - ypdB OKFHMN_22360 0.12 -0.2 4,345,415 - ypdB OKFHMN_22360 0.12 -0.4 4,345,422 - ypdB OKFHMN_22360 0.13 +0.2 4,345,424 + ypdB OKFHMN_22360 0.13 -1.7 4,345,425 - ypdB OKFHMN_22360 0.13 +0.4 4,345,425 - ypdB OKFHMN_22360 0.13 +1.1 4,345,540 - ypdB OKFHMN_22360 0.29 -0.0 4,345,544 - ypdB OKFHMN_22360 0.29 +0.0 4,345,544 - ypdB OKFHMN_22360 0.29 +0.0 4,345,560 - ypdB OKFHMN_22360 0.31 +1.2 4,345,562 - ypdB OKFHMN_22360 0.32 +1.5 4,345,597 + ypdB OKFHMN_22360 0.36 -0.2 4,345,597 + ypdB OKFHMN_22360 0.36 +0.9 4,345,598 - ypdB OKFHMN_22360 0.37 -0.9 4,345,646 + ypdB OKFHMN_22360 0.43 +0.8 4,345,668 + ypdB OKFHMN_22360 0.46 -0.3 4,345,756 + ypdB OKFHMN_22360 0.58 +0.5 4,345,764 + ypdB OKFHMN_22360 0.59 -0.1 4,345,932 - ypdB OKFHMN_22360 0.82 +0.8 4,346,092 + -0.2 4,346,092 + -0.1 4,346,185 - +0.9 4,346,185 - -0.3 4,346,185 - +0.9 4,346,189 + +1.8 4,346,190 - -0.9
Or see this region's nucleotide sequence