Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmpA and glyA are separated by 327 nucleotides glyA and yphH are separated by 62 nucleotides
OKFHMN_21505: hmpA - NO-inducible flavohemoprotein, at 4,167,188 to 4,168,378
hmpA
OKFHMN_21510: glyA - serine hydroxymethyltransferase, at 4,168,706 to 4,169,959
glyA
OKFHMN_21515: yphH - Uncharacterized protein YphH, at 4,170,022 to 4,171,215
yphH
Position (kb) 4168
4169
4170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4167.730 kb on - strand, within hmpA at 4167.816 kb on + strand, within hmpA at 4167.816 kb on + strand, within hmpA at 4167.963 kb on + strand, within hmpA at 4167.989 kb on + strand, within hmpA at 4167.989 kb on + strand, within hmpA at 4167.990 kb on - strand, within hmpA at 4167.990 kb on - strand, within hmpA at 4168.001 kb on + strand, within hmpA at 4168.008 kb on + strand, within hmpA at 4168.009 kb on - strand, within hmpA at 4168.009 kb on - strand, within hmpA at 4168.095 kb on + strand, within hmpA at 4168.096 kb on - strand, within hmpA at 4168.145 kb on + strand, within hmpA at 4168.231 kb on + strand, within hmpA at 4168.231 kb on + strand, within hmpA at 4168.241 kb on - strand, within hmpA at 4168.285 kb on + strand at 4168.285 kb on + strand at 4168.285 kb on + strand at 4168.285 kb on + strand at 4168.286 kb on - strand at 4168.286 kb on - strand at 4168.350 kb on - strand at 4168.378 kb on + strand at 4168.631 kb on + strand at 4168.631 kb on + strand at 4168.632 kb on - strand at 4168.868 kb on + strand, within glyA at 4168.974 kb on - strand, within glyA at 4169.292 kb on - strand, within glyA at 4169.951 kb on + strand at 4169.952 kb on - strand at 4169.957 kb on + strand at 4170.035 kb on - strand at 4170.056 kb on + strand at 4170.172 kb on - strand, within yphH at 4170.172 kb on - strand, within yphH at 4170.177 kb on + strand, within yphH at 4170.228 kb on + strand, within yphH at 4170.231 kb on + strand, within yphH at 4170.255 kb on - strand, within yphH at 4170.255 kb on - strand, within yphH at 4170.424 kb on + strand, within yphH at 4170.518 kb on + strand, within yphH at 4170.695 kb on + strand, within yphH at 4170.695 kb on + strand, within yphH at 4170.911 kb on - strand, within yphH
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,167,730 - hmpA OKFHMN_21505 0.46 -1.4 4,167,816 + hmpA OKFHMN_21505 0.53 -0.3 4,167,816 + hmpA OKFHMN_21505 0.53 -0.7 4,167,963 + hmpA OKFHMN_21505 0.65 -0.2 4,167,989 + hmpA OKFHMN_21505 0.67 +0.1 4,167,989 + hmpA OKFHMN_21505 0.67 +0.1 4,167,990 - hmpA OKFHMN_21505 0.67 -0.0 4,167,990 - hmpA OKFHMN_21505 0.67 +0.6 4,168,001 + hmpA OKFHMN_21505 0.68 +0.9 4,168,008 + hmpA OKFHMN_21505 0.69 -0.8 4,168,009 - hmpA OKFHMN_21505 0.69 -0.9 4,168,009 - hmpA OKFHMN_21505 0.69 -0.4 4,168,095 + hmpA OKFHMN_21505 0.76 -0.2 4,168,096 - hmpA OKFHMN_21505 0.76 +0.6 4,168,145 + hmpA OKFHMN_21505 0.80 +0.3 4,168,231 + hmpA OKFHMN_21505 0.88 +0.0 4,168,231 + hmpA OKFHMN_21505 0.88 +0.1 4,168,241 - hmpA OKFHMN_21505 0.88 -1.4 4,168,285 + -0.6 4,168,285 + -1.3 4,168,285 + -1.1 4,168,285 + -0.4 4,168,286 - -0.9 4,168,286 - -0.6 4,168,350 - -0.0 4,168,378 + +0.1 4,168,631 + -2.3 4,168,631 + +0.3 4,168,632 - -1.3 4,168,868 + glyA OKFHMN_21510 0.13 +1.6 4,168,974 - glyA OKFHMN_21510 0.21 +2.6 4,169,292 - glyA OKFHMN_21510 0.47 -1.8 4,169,951 + +0.1 4,169,952 - +1.1 4,169,957 + -0.0 4,170,035 - +0.2 4,170,056 + -1.1 4,170,172 - yphH OKFHMN_21515 0.13 +0.2 4,170,172 - yphH OKFHMN_21515 0.13 +0.6 4,170,177 + yphH OKFHMN_21515 0.13 -0.9 4,170,228 + yphH OKFHMN_21515 0.17 +1.1 4,170,231 + yphH OKFHMN_21515 0.18 +1.0 4,170,255 - yphH OKFHMN_21515 0.20 +1.6 4,170,255 - yphH OKFHMN_21515 0.20 -0.2 4,170,424 + yphH OKFHMN_21515 0.34 +0.6 4,170,518 + yphH OKFHMN_21515 0.42 +0.2 4,170,695 + yphH OKFHMN_21515 0.56 -1.5 4,170,695 + yphH OKFHMN_21515 0.56 -0.1 4,170,911 - yphH OKFHMN_21515 0.74 +0.1
Or see this region's nucleotide sequence