Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20980

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_20970 and OKFHMN_20975 are separated by 0 nucleotidesOKFHMN_20975 and OKFHMN_20980 are separated by 97 nucleotidesOKFHMN_20980 and OKFHMN_20985 are separated by 395 nucleotides OKFHMN_20970: OKFHMN_20970 - DNA-binding protein, at 4,078,775 to 4,080,406 _20970 OKFHMN_20975: OKFHMN_20975 - hypothetical protein, at 4,080,407 to 4,080,805 _20975 OKFHMN_20980: OKFHMN_20980 - hypothetical protein, at 4,080,903 to 4,081,316 _20980 OKFHMN_20985: OKFHMN_20985 - Procyclic acidic repetitive protein (PARP), at 4,081,712 to 4,082,914 _20985 Position (kb) 4080 4081 4082Strain fitness (log2 ratio) -1 0 1 2at 4080.037 kb on + strand, within OKFHMN_20970at 4080.184 kb on + strand, within OKFHMN_20970at 4080.199 kb on - strand, within OKFHMN_20970at 4080.549 kb on + strand, within OKFHMN_20975at 4080.612 kb on + strand, within OKFHMN_20975at 4080.779 kb on - strandat 4081.117 kb on - strand, within OKFHMN_20980at 4081.625 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
4,080,037 + OKFHMN_20970 0.77 -0.1
4,080,184 + OKFHMN_20970 0.86 +1.0
4,080,199 - OKFHMN_20970 0.87 -0.5
4,080,549 + OKFHMN_20975 0.36 -1.0
4,080,612 + OKFHMN_20975 0.51 -1.4
4,080,779 - -0.7
4,081,117 - OKFHMN_20980 0.52 +2.2
4,081,625 + +0.1

Or see this region's nucleotide sequence