Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygaV and yqaE are separated by 182 nucleotides yqaE and kbp are separated by 83 nucleotides kbp and csiR are separated by 0 nucleotides csiR and gabP are separated by 20 nucleotides
OKFHMN_20885: ygaV - putative HTH-type transcriptional regulator YgaV, at 4,056,901 to 4,057,200
ygaV
OKFHMN_20890: yqaE - UPF0057 membrane protein YqaE, at 4,057,383 to 4,057,541
yqaE
OKFHMN_20895: kbp - potassium binding protein Kbp, at 4,057,625 to 4,058,074
kbp
OKFHMN_20900: csiR - DNA-binding transcriptional regulator CsiR, at 4,058,075 to 4,058,737
csiR
OKFHMN_20905: gabP - GABA permease, at 4,058,758 to 4,060,158
gabP
Position (kb) 4058
4059 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4057.181 kb on - strand at 4057.205 kb on - strand at 4057.253 kb on + strand at 4057.349 kb on + strand at 4057.379 kb on - strand at 4057.382 kb on + strand at 4057.472 kb on + strand, within yqaE at 4057.494 kb on + strand, within yqaE at 4057.495 kb on - strand, within yqaE at 4057.495 kb on - strand, within yqaE at 4057.496 kb on + strand, within yqaE at 4057.586 kb on + strand at 4057.620 kb on + strand at 4057.620 kb on + strand at 4057.621 kb on - strand at 4057.625 kb on - strand at 4057.679 kb on - strand, within kbp at 4057.693 kb on + strand, within kbp at 4057.743 kb on + strand, within kbp at 4057.853 kb on - strand, within kbp at 4058.072 kb on + strand at 4058.073 kb on - strand at 4058.076 kb on + strand at 4058.077 kb on - strand at 4058.121 kb on - strand at 4058.156 kb on - strand, within csiR at 4058.203 kb on + strand, within csiR at 4058.248 kb on + strand, within csiR at 4058.332 kb on + strand, within csiR at 4058.333 kb on - strand, within csiR at 4058.333 kb on - strand, within csiR at 4058.689 kb on + strand at 4058.729 kb on - strand at 4058.729 kb on - strand at 4058.756 kb on + strand at 4058.769 kb on + strand at 4058.795 kb on - strand at 4058.859 kb on + strand at 4058.916 kb on + strand, within gabP at 4059.032 kb on - strand, within gabP at 4059.032 kb on - strand, within gabP at 4059.051 kb on + strand, within gabP at 4059.101 kb on + strand, within gabP at 4059.102 kb on - strand, within gabP at 4059.143 kb on - strand, within gabP at 4059.143 kb on - strand, within gabP at 4059.155 kb on + strand, within gabP at 4059.155 kb on + strand, within gabP at 4059.240 kb on + strand, within gabP at 4059.242 kb on + strand, within gabP at 4059.242 kb on + strand, within gabP at 4059.243 kb on - strand, within gabP at 4059.278 kb on - strand, within gabP at 4059.313 kb on + strand, within gabP at 4059.316 kb on - strand, within gabP at 4059.316 kb on - strand, within gabP at 4059.391 kb on + strand, within gabP at 4059.391 kb on + strand, within gabP at 4059.392 kb on - strand, within gabP at 4059.392 kb on - strand, within gabP at 4059.414 kb on - strand, within gabP at 4059.426 kb on + strand, within gabP at 4059.427 kb on - strand, within gabP at 4059.427 kb on - strand, within gabP at 4059.548 kb on - strand, within gabP at 4059.551 kb on - strand, within gabP at 4059.621 kb on - strand, within gabP at 4059.627 kb on - strand, within gabP at 4059.672 kb on + strand, within gabP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 4,057,181 - +0.7 4,057,205 - +0.1 4,057,253 + +1.6 4,057,349 + +0.5 4,057,379 - -0.1 4,057,382 + +0.2 4,057,472 + yqaE OKFHMN_20890 0.56 +0.7 4,057,494 + yqaE OKFHMN_20890 0.70 -0.3 4,057,495 - yqaE OKFHMN_20890 0.70 +0.2 4,057,495 - yqaE OKFHMN_20890 0.70 -0.1 4,057,496 + yqaE OKFHMN_20890 0.71 +0.2 4,057,586 + +0.0 4,057,620 + +0.8 4,057,620 + -0.4 4,057,621 - -0.0 4,057,625 - -0.2 4,057,679 - kbp OKFHMN_20895 0.12 -0.7 4,057,693 + kbp OKFHMN_20895 0.15 -0.1 4,057,743 + kbp OKFHMN_20895 0.26 -0.9 4,057,853 - kbp OKFHMN_20895 0.51 -0.1 4,058,072 + +0.4 4,058,073 - -0.4 4,058,076 + -0.3 4,058,077 - +1.1 4,058,121 - +0.5 4,058,156 - csiR OKFHMN_20900 0.12 +0.2 4,058,203 + csiR OKFHMN_20900 0.19 +0.0 4,058,248 + csiR OKFHMN_20900 0.26 +0.9 4,058,332 + csiR OKFHMN_20900 0.39 -0.8 4,058,333 - csiR OKFHMN_20900 0.39 -0.6 4,058,333 - csiR OKFHMN_20900 0.39 -0.8 4,058,689 + -0.2 4,058,729 - +0.0 4,058,729 - +0.6 4,058,756 + -1.4 4,058,769 + -0.4 4,058,795 - +2.0 4,058,859 + +0.2 4,058,916 + gabP OKFHMN_20905 0.11 -0.1 4,059,032 - gabP OKFHMN_20905 0.20 -0.3 4,059,032 - gabP OKFHMN_20905 0.20 -0.0 4,059,051 + gabP OKFHMN_20905 0.21 -0.3 4,059,101 + gabP OKFHMN_20905 0.24 -0.1 4,059,102 - gabP OKFHMN_20905 0.25 +0.6 4,059,143 - gabP OKFHMN_20905 0.27 +0.3 4,059,143 - gabP OKFHMN_20905 0.27 -0.4 4,059,155 + gabP OKFHMN_20905 0.28 -2.4 4,059,155 + gabP OKFHMN_20905 0.28 +0.6 4,059,240 + gabP OKFHMN_20905 0.34 +0.0 4,059,242 + gabP OKFHMN_20905 0.35 +0.8 4,059,242 + gabP OKFHMN_20905 0.35 -1.3 4,059,243 - gabP OKFHMN_20905 0.35 -0.2 4,059,278 - gabP OKFHMN_20905 0.37 +1.6 4,059,313 + gabP OKFHMN_20905 0.40 -0.1 4,059,316 - gabP OKFHMN_20905 0.40 +0.2 4,059,316 - gabP OKFHMN_20905 0.40 -1.2 4,059,391 + gabP OKFHMN_20905 0.45 +0.3 4,059,391 + gabP OKFHMN_20905 0.45 +0.9 4,059,392 - gabP OKFHMN_20905 0.45 -1.1 4,059,392 - gabP OKFHMN_20905 0.45 -0.0 4,059,414 - gabP OKFHMN_20905 0.47 +1.5 4,059,426 + gabP OKFHMN_20905 0.48 +0.5 4,059,427 - gabP OKFHMN_20905 0.48 -0.3 4,059,427 - gabP OKFHMN_20905 0.48 -0.3 4,059,548 - gabP OKFHMN_20905 0.56 +1.2 4,059,551 - gabP OKFHMN_20905 0.57 +2.0 4,059,621 - gabP OKFHMN_20905 0.62 +1.9 4,059,627 - gabP OKFHMN_20905 0.62 +0.4 4,059,672 + gabP OKFHMN_20905 0.65 -1.0
Or see this region's nucleotide sequence