Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20435

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
3,977,262	+	cas1e	OKFHMN_20425	0.67	+1.2
3,977,348	+	cas1e	OKFHMN_20425	0.76	+1.7
3,977,391	-	cas1e	OKFHMN_20425	0.81	+0.5
3,977,391	-	cas1e	OKFHMN_20425	0.81	+0.1
3,977,435	+	cas1e	OKFHMN_20425	0.85	-0.2
3,977,500	-				+1.0
3,977,608	+	cas2e	OKFHMN_20430	0.15	+0.7
3,977,656	-	cas2e	OKFHMN_20430	0.31	+0.5
3,977,666	+	cas2e	OKFHMN_20430	0.34	+1.1
3,977,666	+	cas2e	OKFHMN_20430	0.34	-1.0
3,977,678	+	cas2e	OKFHMN_20430	0.38	-0.7
3,977,753	+	cas2e	OKFHMN_20430	0.64	+0.7
3,977,798	+	cas2e	OKFHMN_20430	0.79	+1.7
3,977,798	+	cas2e	OKFHMN_20430	0.79	+0.7
3,977,798	+	cas2e	OKFHMN_20430	0.79	+0.2
3,977,821	+	cas2e	OKFHMN_20430	0.87	+0.2
3,977,903	+				+2.2
3,977,903	+				-0.2
3,977,904	-				-1.3
3,977,904	-				-0.1
3,977,945	+				-0.0
3,977,945	+				-0.6
3,977,946	-				+0.1
3,977,946	-				+1.2
3,978,198	-				-0.2
3,978,198	-				-2.2
3,978,318	-				-0.3
3,978,318	-				+0.6
3,978,343	+				+0.5
3,978,344	-				-0.3
3,978,344	-				+0.7
3,978,344	-				-0.3
3,978,365	+	iap	OKFHMN_20435	0.11	+0.6
3,978,365	+	iap	OKFHMN_20435	0.11	-0.0
3,978,379	+	iap	OKFHMN_20435	0.13	+1.7
3,978,430	+	iap	OKFHMN_20435	0.18	-0.7
3,978,492	-	iap	OKFHMN_20435	0.24	+0.2
3,978,505	+	iap	OKFHMN_20435	0.25	-0.2
3,978,505	+	iap	OKFHMN_20435	0.25	-0.3
3,978,506	-	iap	OKFHMN_20435	0.25	-0.4
3,978,575	-	iap	OKFHMN_20435	0.32	-0.2
3,978,575	-	iap	OKFHMN_20435	0.32	-0.5
3,978,682	+	iap	OKFHMN_20435	0.42	+0.8
3,978,683	-	iap	OKFHMN_20435	0.42	-0.2
3,978,872	+	iap	OKFHMN_20435	0.60	-0.2
3,978,924	+	iap	OKFHMN_20435	0.65	+0.3
3,978,924	+	iap	OKFHMN_20435	0.65	-0.2
3,978,925	-	iap	OKFHMN_20435	0.65	+0.5
3,978,925	-	iap	OKFHMN_20435	0.65	+0.2
3,978,925	-	iap	OKFHMN_20435	0.65	+1.7
3,978,925	-	iap	OKFHMN_20435	0.65	+1.7
3,979,039	-	iap	OKFHMN_20435	0.76	+0.0
3,979,039	-	iap	OKFHMN_20435	0.76	-2.3
3,979,039	-	iap	OKFHMN_20435	0.76	-0.1
3,979,042	+	iap	OKFHMN_20435	0.76	+0.1
3,979,067	-	iap	OKFHMN_20435	0.79	+0.4
3,979,169	-	iap	OKFHMN_20435	0.89	+0.1
3,979,169	-	iap	OKFHMN_20435	0.89	+1.0
3,979,231	+				-0.1
3,979,231	+				+0.6
3,979,297	-				-0.8
3,979,301	-				-0.1
3,979,368	+				+0.8
3,979,451	-				+0.1
3,979,548	-				+0.5
3,979,636	+	cysD	OKFHMN_20440	0.11	-1.7
3,979,636	+	cysD	OKFHMN_20440	0.11	-0.7
3,979,637	-	cysD	OKFHMN_20440	0.11	+1.7
3,979,753	+	cysD	OKFHMN_20440	0.24	-0.6
3,979,753	+	cysD	OKFHMN_20440	0.24	+0.5
3,979,753	+	cysD	OKFHMN_20440	0.24	+0.1
3,979,753	+	cysD	OKFHMN_20440	0.24	-0.2
3,979,754	-	cysD	OKFHMN_20440	0.24	+0.1
3,979,754	-	cysD	OKFHMN_20440	0.24	+0.2
3,979,784	-	cysD	OKFHMN_20440	0.27	-1.6
3,979,836	+	cysD	OKFHMN_20440	0.33	-0.3
3,979,836	+	cysD	OKFHMN_20440	0.33	+0.2
3,979,872	+	cysD	OKFHMN_20440	0.37	+0.1
3,979,875	+	cysD	OKFHMN_20440	0.37	+0.7
3,979,876	-	cysD	OKFHMN_20440	0.37	+0.8
3,979,913	-	cysD	OKFHMN_20440	0.41	-0.9
3,979,977	+	cysD	OKFHMN_20440	0.48	+1.4
3,979,977	+	cysD	OKFHMN_20440	0.48	-0.1
3,979,978	-	cysD	OKFHMN_20440	0.49	+0.2
3,979,981	+	cysD	OKFHMN_20440	0.49	-0.1
3,979,982	-	cysD	OKFHMN_20440	0.49	+0.9
3,980,199	+	cysD	OKFHMN_20440	0.73	-2.0