Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18320

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
3,553,823	+	nagA	OKFHMN_18310	0.52	-0.3
3,553,882	-	nagA	OKFHMN_18310	0.57	+1.2
3,553,882	-	nagA	OKFHMN_18310	0.57	+1.2
3,553,981	+	nagA	OKFHMN_18310	0.66	-0.7
3,553,982	-	nagA	OKFHMN_18310	0.66	+0.8
3,554,048	+	nagA	OKFHMN_18310	0.72	-0.1
3,554,048	+	nagA	OKFHMN_18310	0.72	-0.3
3,554,049	-	nagA	OKFHMN_18310	0.72	-0.8
3,554,075	+	nagA	OKFHMN_18310	0.75	-0.6
3,554,075	+	nagA	OKFHMN_18310	0.75	+0.2
3,554,075	+	nagA	OKFHMN_18310	0.75	+0.5
3,554,075	+	nagA	OKFHMN_18310	0.75	-0.1
3,554,151	+	nagA	OKFHMN_18310	0.81	+0.1
3,554,152	-	nagA	OKFHMN_18310	0.81	-0.4
3,554,172	+	nagA	OKFHMN_18310	0.83	+0.8
3,554,196	+	nagA	OKFHMN_18310	0.85	-0.3
3,554,197	-	nagA	OKFHMN_18310	0.85	-0.3
3,554,213	-	nagA	OKFHMN_18310	0.87	+0.8
3,554,363	+				-0.8
3,554,454	-	agaF	OKFHMN_18315	0.22	-0.5
3,554,504	+	agaF	OKFHMN_18315	0.33	-0.2
3,554,789	+				+0.4
3,554,894	-				-0.0
3,554,929	+	agaE	OKFHMN_18320	0.13	-0.6
3,554,956	-	agaE	OKFHMN_18320	0.16	-0.2
3,554,968	+	agaE	OKFHMN_18320	0.18	-0.6
3,554,974	-	agaE	OKFHMN_18320	0.18	-0.1
3,555,023	+	agaE	OKFHMN_18320	0.24	+0.6
3,555,023	+	agaE	OKFHMN_18320	0.24	-0.0
3,555,023	+	agaE	OKFHMN_18320	0.24	-1.0
3,555,023	+	agaE	OKFHMN_18320	0.24	-0.0
3,555,023	+	agaE	OKFHMN_18320	0.24	-1.0
3,555,024	-	agaE	OKFHMN_18320	0.24	+0.3
3,555,024	-	agaE	OKFHMN_18320	0.24	-1.2
3,555,091	-	agaE	OKFHMN_18320	0.32	+0.4
3,555,093	+	agaE	OKFHMN_18320	0.32	-0.3
3,555,093	+	agaE	OKFHMN_18320	0.32	-0.1
3,555,094	-	agaE	OKFHMN_18320	0.32	-1.0
3,555,094	-	agaE	OKFHMN_18320	0.32	+0.2
3,555,137	+	agaE	OKFHMN_18320	0.37	-0.1
3,555,189	+	agaE	OKFHMN_18320	0.43	-0.0
3,555,189	+	agaE	OKFHMN_18320	0.43	+0.0
3,555,190	-	agaE	OKFHMN_18320	0.43	-0.2
3,555,336	+	agaE	OKFHMN_18320	0.60	-0.1
3,555,456	+	agaE	OKFHMN_18320	0.73	-0.5
3,555,457	-	agaE	OKFHMN_18320	0.73	+0.1
3,555,521	+	agaE	OKFHMN_18320	0.81	+0.3
3,555,522	-	agaE	OKFHMN_18320	0.81	-0.4
3,555,526	-	agaE	OKFHMN_18320	0.81	+0.4
3,555,538	+	agaE	OKFHMN_18320	0.83	+0.3
3,555,682	-				-0.0
3,555,682	-				+0.5
3,555,784	+	agaW	OKFHMN_18325	0.13	+0.5
3,555,798	-	agaW	OKFHMN_18325	0.15	+0.6
3,555,838	-	agaW	OKFHMN_18325	0.20	-0.2
3,555,846	+	agaW	OKFHMN_18325	0.21	+1.1
3,555,847	-	agaW	OKFHMN_18325	0.21	+0.3
3,555,981	+	agaW	OKFHMN_18325	0.39	+1.2
3,555,986	-	agaW	OKFHMN_18325	0.39	-0.2
3,556,039	-	agaW	OKFHMN_18325	0.46	+0.8
3,556,043	+	agaW	OKFHMN_18325	0.47	+0.8
3,556,130	-	agaW	OKFHMN_18325	0.58	+0.0
3,556,142	+	agaW	OKFHMN_18325	0.59	+0.2
3,556,161	-	agaW	OKFHMN_18325	0.62	-0.6
3,556,198	+	agaW	OKFHMN_18325	0.66	+0.1
3,556,198	+	agaW	OKFHMN_18325	0.66	-0.8
3,556,199	-	agaW	OKFHMN_18325	0.67	+1.6
3,556,201	+	agaW	OKFHMN_18325	0.67	-0.7
3,556,202	-	agaW	OKFHMN_18325	0.67	+0.7
3,556,243	+	agaW	OKFHMN_18325	0.72	+0.1
3,556,335	-	agaW	OKFHMN_18325	0.84	+0.2