Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17105

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
3,341,293	+	hofN	OKFHMN_17090	0.70	+0.2
3,341,293	+	hofN	OKFHMN_17090	0.70	+0.6
3,341,293	+	hofN	OKFHMN_17090	0.70	+0.5
3,341,306	-	hofN	OKFHMN_17090	0.73	-0.7
3,341,418	+				-0.5
3,341,419	-				-0.2
3,341,515	+	hofO	OKFHMN_17095	0.18	-0.4
3,341,515	+	hofO	OKFHMN_17095	0.18	-0.8
3,341,515	+	hofO	OKFHMN_17095	0.18	+1.2
3,341,516	-	hofO	OKFHMN_17095	0.18	-0.5
3,341,519	+	hofO	OKFHMN_17095	0.19	+0.5
3,341,520	-	hofO	OKFHMN_17095	0.19	+0.3
3,341,610	+	hofO	OKFHMN_17095	0.39	+0.7
3,341,611	-	hofO	OKFHMN_17095	0.40	-0.1
3,341,771	+	hofO	OKFHMN_17095	0.76	+0.1
3,341,875	-				+1.9
3,341,895	+				+0.0
3,341,895	+				-0.5
3,341,935	-	hofP	OKFHMN_17100	0.17	-1.1
3,341,951	+	hofP	OKFHMN_17100	0.21	-0.0
3,341,952	-	hofP	OKFHMN_17100	0.21	-0.3
3,341,952	-	hofP	OKFHMN_17100	0.21	-0.8
3,342,023	+	hofP	OKFHMN_17100	0.39	-0.3
3,342,023	+	hofP	OKFHMN_17100	0.39	-0.6
3,342,026	+	hofP	OKFHMN_17100	0.40	+0.3
3,342,113	+	hofP	OKFHMN_17100	0.61	+0.1
3,342,113	+	hofP	OKFHMN_17100	0.61	-0.2
3,342,113	+	hofP	OKFHMN_17100	0.61	+0.6
3,342,114	-	hofP	OKFHMN_17100	0.61	+0.7
3,342,114	-	hofP	OKFHMN_17100	0.61	+1.1
3,342,114	-	hofP	OKFHMN_17100	0.61	-0.3
3,342,116	+	hofP	OKFHMN_17100	0.62	+0.7
3,342,116	+	hofP	OKFHMN_17100	0.62	-0.3
3,342,117	-	hofP	OKFHMN_17100	0.62	+0.3
3,342,204	+	hofP	OKFHMN_17100	0.83	-0.2
3,342,204	+	hofP	OKFHMN_17100	0.83	+0.4
3,342,205	-	hofP	OKFHMN_17100	0.84	-1.6
3,342,205	-	hofP	OKFHMN_17100	0.84	+0.1
3,342,205	-	hofP	OKFHMN_17100	0.84	-0.4
3,342,361	-	hofQ	OKFHMN_17105	0.12	+0.1
3,342,361	-	hofQ	OKFHMN_17105	0.12	+0.3
3,342,366	+	hofQ	OKFHMN_17105	0.13	+0.2
3,342,367	-	hofQ	OKFHMN_17105	0.13	-1.4
3,342,548	-	hofQ	OKFHMN_17105	0.28	-0.2
3,342,597	+	hofQ	OKFHMN_17105	0.32	-0.4
3,342,617	-	hofQ	OKFHMN_17105	0.33	-1.1
3,342,693	+	hofQ	OKFHMN_17105	0.40	-0.1
3,342,739	+	hofQ	OKFHMN_17105	0.44	+0.4
3,342,739	+	hofQ	OKFHMN_17105	0.44	-1.1
3,342,740	-	hofQ	OKFHMN_17105	0.44	+0.5
3,342,775	-	hofQ	OKFHMN_17105	0.47	-0.7
3,343,007	-	hofQ	OKFHMN_17105	0.66	+0.3
3,343,072	+	hofQ	OKFHMN_17105	0.71	-0.6
3,343,072	+	hofQ	OKFHMN_17105	0.71	-0.2
3,343,140	+	hofQ	OKFHMN_17105	0.77	-1.0
3,343,140	+	hofQ	OKFHMN_17105	0.77	-2.1
3,343,173	+	hofQ	OKFHMN_17105	0.79	-0.1
3,343,174	-	hofQ	OKFHMN_17105	0.80	-0.2
3,343,174	-	hofQ	OKFHMN_17105	0.80	-0.2
3,343,301	-				-0.1
3,343,341	+				+0.1
3,343,342	-				-1.6
3,343,342	-				-0.2
3,343,380	+				-0.2
3,343,418	+				+0.4
3,343,419	-				+0.5
3,343,466	+				+0.4
3,343,483	+				+1.5
3,343,487	+				-0.3
3,343,487	+				+0.5
3,343,492	+				+1.2
3,343,585	-				+0.7
3,343,676	-				-0.1
3,343,805	+	aroK	OKFHMN_17110	0.21	+1.9
3,343,806	-	aroK	OKFHMN_17110	0.21	+1.9
3,343,808	+	aroK	OKFHMN_17110	0.21	+0.6
3,343,809	-	aroK	OKFHMN_17110	0.21	-2.3
3,343,891	+	aroK	OKFHMN_17110	0.33	+0.9
3,343,978	+	aroK	OKFHMN_17110	0.46	-1.3
3,344,045	+	aroK	OKFHMN_17110	0.56	+0.9
3,344,250	+	aroK	OKFHMN_17110	0.86	-0.4
3,344,279	+				-0.7
3,344,280	-				+1.9
3,344,297	+				-0.4
3,344,318	+				-1.1
3,344,340	+				+0.0
3,344,341	-				+0.9
3,344,352	+				-0.3
3,344,352	+				-0.5
3,344,353	-				+0.0
3,344,354	+				+2.5
3,344,354	+				-0.0
3,344,354	+				-0.5
3,344,354	+				+0.4
3,344,355	-				-0.3
3,344,355	-				+1.4
3,344,356	+				+0.9
3,344,357	-				+1.3
3,344,377	+				-0.6
3,344,377	+				-0.2
3,344,377	+				+1.9
3,344,377	+				+1.9
3,344,377	+				-0.3
3,344,378	-				+0.6
3,344,378	-				+0.5
3,344,398	+				-0.4
3,344,398	+				+0.1
3,344,399	-				+0.9
3,344,417	-				-0.1