Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15235

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,947,261	+	nepI	OKFHMN_15230	0.24	+0.0
2,947,269	+	nepI	OKFHMN_15230	0.25	+0.6
2,947,270	-	nepI	OKFHMN_15230	0.25	+0.2
2,947,566	+	nepI	OKFHMN_15230	0.49	-1.0
2,947,630	-	nepI	OKFHMN_15230	0.54	+0.5
2,947,643	+	nepI	OKFHMN_15230	0.55	+0.1
2,947,643	+	nepI	OKFHMN_15230	0.55	+0.8
2,947,643	+	nepI	OKFHMN_15230	0.55	+0.4
2,947,683	+	nepI	OKFHMN_15230	0.59	+0.1
2,947,684	-	nepI	OKFHMN_15230	0.59	-0.6
2,947,717	+	nepI	OKFHMN_15230	0.61	+0.3
2,947,718	-	nepI	OKFHMN_15230	0.61	-0.8
2,947,718	-	nepI	OKFHMN_15230	0.61	+0.1
2,947,732	+	nepI	OKFHMN_15230	0.62	-0.1
2,947,732	+	nepI	OKFHMN_15230	0.62	+0.0
2,947,733	-	nepI	OKFHMN_15230	0.63	-0.9
2,947,733	-	nepI	OKFHMN_15230	0.63	+2.9
2,947,733	-	nepI	OKFHMN_15230	0.63	+0.1
2,947,734	+	nepI	OKFHMN_15230	0.63	-0.2
2,947,734	+	nepI	OKFHMN_15230	0.63	-0.1
2,947,734	+	nepI	OKFHMN_15230	0.63	-0.3
2,947,766	+	nepI	OKFHMN_15230	0.65	+0.3
2,947,929	+	nepI	OKFHMN_15230	0.78	-0.1
2,947,930	-	nepI	OKFHMN_15230	0.78	-0.7
2,947,945	-	nepI	OKFHMN_15230	0.80	+0.8
2,947,968	-	nepI	OKFHMN_15230	0.82	-0.1
2,948,035	-	nepI	OKFHMN_15230	0.87	+0.1
2,948,238	+				+0.2
2,948,238	+				-0.6
2,948,239	-				-1.3
2,948,239	-				+1.4
2,948,242	+				+0.4
2,948,243	-				+0.1
2,948,255	+				+0.9
2,948,256	-				-2.3
2,948,321	+	yicS	OKFHMN_15235	0.29	+1.6
2,948,321	+	yicS	OKFHMN_15235	0.29	-1.2
2,948,322	-	yicS	OKFHMN_15235	0.29	+1.5
2,948,323	+	yicS	OKFHMN_15235	0.29	-1.4
2,948,324	-	yicS	OKFHMN_15235	0.30	-0.5
2,948,324	-	yicS	OKFHMN_15235	0.30	+0.0
2,948,421	-	yicS	OKFHMN_15235	0.63	+0.9
2,948,499	-	yicS	OKFHMN_15235	0.89	+0.1
2,948,499	-	yicS	OKFHMN_15235	0.89	-0.3
2,948,531	-				-0.3
2,948,568	+				+1.5
2,948,569	-				+0.7
2,948,574	+				-0.8
2,948,574	+				-0.6
2,948,629	-				-0.8
2,948,717	+				+1.5
2,948,720	-				+0.1
2,948,734	+				-0.9
2,948,792	+				+0.9
2,948,909	+	nlpA	OKFHMN_15240	0.19	+0.4
2,948,986	-	nlpA	OKFHMN_15240	0.29	-0.6
2,949,078	+	nlpA	OKFHMN_15240	0.40	-1.4
2,949,135	-	nlpA	OKFHMN_15240	0.47	+0.1
2,949,245	+	nlpA	OKFHMN_15240	0.60	+1.9
2,949,262	-	nlpA	OKFHMN_15240	0.62	+0.9
2,949,367	+	nlpA	OKFHMN_15240	0.75	+0.5
2,949,367	+	nlpA	OKFHMN_15240	0.75	+0.5
2,949,408	-	nlpA	OKFHMN_15240	0.80	+0.9
2,949,466	-	nlpA	OKFHMN_15240	0.87	+0.4
2,949,503	-				-0.9