Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15120

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyidJ and yidI are separated by 46 nucleotidesyidI and yidH are separated by 108 nucleotidesyidH and yidG overlap by 11 nucleotidesyidG and OKFHMN_15130 overlap by 4 nucleotidesOKFHMN_15130 and emrD are separated by 7 nucleotides OKFHMN_15110: yidJ - Uncharacterized sulfatase YidJ, at 2,926,199 to 2,927,692 yidJ OKFHMN_15115: yidI - Inner membrane protein YidI, at 2,927,739 to 2,928,188 yidI OKFHMN_15120: yidH - Inner membrane protein YidH, at 2,928,297 to 2,928,644 yidH OKFHMN_15125: yidG - Inner membrane protein YidG, at 2,928,634 to 2,928,996 yidG OKFHMN_15130: OKFHMN_15130 - Anaerobic sulfatase-maturating enzyme, at 2,928,993 to 2,929,490 _15130 OKFHMN_15135: emrD - multidrug efflux MFS transporter EmrD, at 2,929,498 to 2,930,682 emrD Position (kb) 2928 2929Strain fitness (log2 ratio) -1 0 1 2at 2927.499 kb on - strand, within yidJat 2927.500 kb on + strand, within yidJat 2927.501 kb on - strand, within yidJat 2927.531 kb on + strand, within yidJat 2927.613 kb on - strandat 2927.613 kb on - strandat 2927.626 kb on - strandat 2927.633 kb on + strandat 2927.634 kb on - strandat 2927.634 kb on - strandat 2927.727 kb on + strandat 2927.728 kb on - strandat 2927.740 kb on + strandat 2927.741 kb on - strandat 2927.741 kb on - strandat 2927.774 kb on + strandat 2927.781 kb on + strandat 2927.825 kb on + strand, within yidIat 2927.895 kb on - strand, within yidIat 2928.013 kb on - strand, within yidIat 2928.013 kb on - strand, within yidIat 2928.144 kb on + strandat 2928.145 kb on - strandat 2928.145 kb on - strandat 2928.219 kb on + strandat 2928.266 kb on - strandat 2928.501 kb on + strand, within yidHat 2928.501 kb on + strand, within yidHat 2928.501 kb on + strand, within yidHat 2928.501 kb on + strand, within yidHat 2928.502 kb on - strand, within yidHat 2928.502 kb on - strand, within yidHat 2928.502 kb on - strand, within yidHat 2928.574 kb on + strand, within yidHat 2928.575 kb on - strand, within yidHat 2928.589 kb on + strand, within yidHat 2928.604 kb on + strand, within yidHat 2928.605 kb on - strand, within yidHat 2928.690 kb on + strand, within yidGat 2928.690 kb on + strand, within yidGat 2928.690 kb on + strand, within yidGat 2928.690 kb on + strand, within yidGat 2928.690 kb on + strand, within yidGat 2928.691 kb on - strand, within yidGat 2928.691 kb on - strand, within yidGat 2928.691 kb on - strand, within yidGat 2928.711 kb on + strand, within yidGat 2928.779 kb on + strand, within yidGat 2928.779 kb on + strand, within yidGat 2928.780 kb on - strand, within yidGat 2928.833 kb on - strand, within yidGat 2928.939 kb on - strand, within yidGat 2928.957 kb on + strand, within yidGat 2928.958 kb on - strand, within yidGat 2928.959 kb on + strand, within yidGat 2928.959 kb on + strand, within yidGat 2928.960 kb on - strandat 2928.960 kb on - strandat 2928.960 kb on - strandat 2928.975 kb on - strandat 2928.975 kb on - strandat 2928.975 kb on - strandat 2928.975 kb on - strandat 2929.034 kb on + strandat 2929.034 kb on + strandat 2929.034 kb on + strandat 2929.122 kb on - strand, within OKFHMN_15130at 2929.232 kb on + strand, within OKFHMN_15130at 2929.241 kb on + strand, within OKFHMN_15130at 2929.270 kb on + strand, within OKFHMN_15130at 2929.421 kb on + strand, within OKFHMN_15130at 2929.422 kb on - strand, within OKFHMN_15130at 2929.500 kb on - strandat 2929.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,927,499 - yidJ OKFHMN_15110 0.87 +0.0
2,927,500 + yidJ OKFHMN_15110 0.87 +0.1
2,927,501 - yidJ OKFHMN_15110 0.87 -0.8
2,927,531 + yidJ OKFHMN_15110 0.89 -0.4
2,927,613 - +0.2
2,927,613 - +0.2
2,927,626 - -0.1
2,927,633 + -0.9
2,927,634 - +0.4
2,927,634 - +0.4
2,927,727 + +1.9
2,927,728 - +0.1
2,927,740 + -0.7
2,927,741 - +1.1
2,927,741 - +0.4
2,927,774 + +0.4
2,927,781 + +0.2
2,927,825 + yidI OKFHMN_15115 0.19 -1.2
2,927,895 - yidI OKFHMN_15115 0.35 +0.2
2,928,013 - yidI OKFHMN_15115 0.61 -0.7
2,928,013 - yidI OKFHMN_15115 0.61 +0.2
2,928,144 + -0.6
2,928,145 - +0.4
2,928,145 - +0.2
2,928,219 + +0.1
2,928,266 - +0.4
2,928,501 + yidH OKFHMN_15120 0.59 +0.6
2,928,501 + yidH OKFHMN_15120 0.59 -0.5
2,928,501 + yidH OKFHMN_15120 0.59 +0.4
2,928,501 + yidH OKFHMN_15120 0.59 +0.1
2,928,502 - yidH OKFHMN_15120 0.59 +0.6
2,928,502 - yidH OKFHMN_15120 0.59 -1.2
2,928,502 - yidH OKFHMN_15120 0.59 -0.4
2,928,574 + yidH OKFHMN_15120 0.80 -0.2
2,928,575 - yidH OKFHMN_15120 0.80 -0.3
2,928,589 + yidH OKFHMN_15120 0.84 +0.7
2,928,604 + yidH OKFHMN_15120 0.88 +0.1
2,928,605 - yidH OKFHMN_15120 0.89 -0.5
2,928,690 + yidG OKFHMN_15125 0.15 +0.5
2,928,690 + yidG OKFHMN_15125 0.15 -0.2
2,928,690 + yidG OKFHMN_15125 0.15 +0.1
2,928,690 + yidG OKFHMN_15125 0.15 +1.1
2,928,690 + yidG OKFHMN_15125 0.15 -0.6
2,928,691 - yidG OKFHMN_15125 0.16 -1.1
2,928,691 - yidG OKFHMN_15125 0.16 +0.8
2,928,691 - yidG OKFHMN_15125 0.16 -0.6
2,928,711 + yidG OKFHMN_15125 0.21 -0.4
2,928,779 + yidG OKFHMN_15125 0.40 -0.1
2,928,779 + yidG OKFHMN_15125 0.40 +0.7
2,928,780 - yidG OKFHMN_15125 0.40 +0.4
2,928,833 - yidG OKFHMN_15125 0.55 +0.2
2,928,939 - yidG OKFHMN_15125 0.84 -0.0
2,928,957 + yidG OKFHMN_15125 0.89 -0.1
2,928,958 - yidG OKFHMN_15125 0.89 -0.1
2,928,959 + yidG OKFHMN_15125 0.90 +0.3
2,928,959 + yidG OKFHMN_15125 0.90 -1.1
2,928,960 - +1.4
2,928,960 - +0.8
2,928,960 - +0.5
2,928,975 - +0.0
2,928,975 - -0.1
2,928,975 - +0.0
2,928,975 - -0.9
2,929,034 + -0.2
2,929,034 + -0.2
2,929,034 + +1.9
2,929,122 - OKFHMN_15130 0.26 -0.1
2,929,232 + OKFHMN_15130 0.48 -0.3
2,929,241 + OKFHMN_15130 0.50 +0.4
2,929,270 + OKFHMN_15130 0.56 -0.6
2,929,421 + OKFHMN_15130 0.86 -0.7
2,929,422 - OKFHMN_15130 0.86 +0.6
2,929,500 - +0.7
2,929,571 - -0.2

Or see this region's nucleotide sequence