Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14825

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpA and atpG are separated by 50 nucleotidesatpG and atpD are separated by 26 nucleotides OKFHMN_14820: atpA - F0F1 ATP synthase subunit alpha, at 2,861,779 to 2,863,320 atpA OKFHMN_14825: atpG - F0F1 ATP synthase subunit gamma, at 2,863,371 to 2,864,234 atpG OKFHMN_14830: atpD - F0F1 ATP synthase subunit beta, at 2,864,261 to 2,865,643 atpD Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -1 0 1at 2864.232 kb on + strandat 2864.241 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,864,232 + -0.4
2,864,241 + +0.1

Or see this region's nucleotide sequence