Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14805

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpI and atpB are separated by 8 nucleotidesatpB and atpE are separated by 46 nucleotidesatpE and atpF are separated by 61 nucleotidesatpF and atpH are separated by 14 nucleotides OKFHMN_14795: atpI - F0F1 ATP synthase subunit I, at 2,859,196 to 2,859,576 atpI OKFHMN_14800: atpB - F0F1 ATP synthase subunit A, at 2,859,585 to 2,860,400 atpB OKFHMN_14805: atpE - F0F1 ATP synthase subunit C, at 2,860,447 to 2,860,686 atpE OKFHMN_14810: atpF - F0F1 ATP synthase subunit B, at 2,860,748 to 2,861,218 atpF OKFHMN_14815: atpH - F0F1 ATP synthase subunit delta, at 2,861,233 to 2,861,766 atpH Position (kb) 2860 2861Strain fitness (log2 ratio) -1 0 1at 2859.513 kb on + strand, within atpIat 2859.557 kb on + strandat 2859.557 kb on + strandat 2859.557 kb on + strandat 2860.398 kb on + strandat 2860.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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2,859,513 + atpI OKFHMN_14795 0.83 -0.4
2,859,557 + +0.4
2,859,557 + -1.5
2,859,557 + +0.9
2,860,398 + -1.6
2,860,398 + -0.0

Or see this region's nucleotide sequence