Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rho and trxA are separated by 326 nucleotides trxA and rhlB are separated by 130 nucleotides
OKFHMN_14590: rho - transcription termination factor Rho, at 2,813,997 to 2,815,256
rho
OKFHMN_14595: trxA - thioredoxin TrxA, at 2,815,583 to 2,815,912
trxA
OKFHMN_14600: rhlB - ATP-dependent RNA helicase RhlB, at 2,816,043 to 2,817,308
rhlB
Position (kb)
2815
2816 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2815.312 kb on - strand at 2815.523 kb on - strand at 2815.764 kb on + strand, within trxA at 2815.863 kb on - strand, within trxA at 2815.898 kb on - strand at 2815.912 kb on + strand at 2815.912 kb on + strand at 2815.912 kb on + strand at 2815.912 kb on + strand at 2815.913 kb on - strand at 2815.913 kb on - strand at 2815.914 kb on + strand at 2815.915 kb on - strand at 2815.915 kb on - strand at 2815.915 kb on - strand at 2815.915 kb on - strand at 2815.915 kb on - strand at 2815.975 kb on + strand at 2815.976 kb on - strand at 2815.976 kb on - strand at 2816.011 kb on - strand at 2816.018 kb on + strand at 2816.019 kb on - strand at 2816.019 kb on - strand at 2816.019 kb on - strand at 2816.021 kb on + strand at 2816.022 kb on - strand at 2816.042 kb on + strand at 2816.042 kb on + strand at 2816.043 kb on - strand at 2816.132 kb on + strand at 2816.306 kb on - strand, within rhlB at 2816.306 kb on - strand, within rhlB at 2816.397 kb on + strand, within rhlB at 2816.477 kb on - strand, within rhlB at 2816.524 kb on + strand, within rhlB at 2816.531 kb on - strand, within rhlB at 2816.553 kb on + strand, within rhlB at 2816.570 kb on + strand, within rhlB at 2816.576 kb on + strand, within rhlB at 2816.598 kb on - strand, within rhlB at 2816.598 kb on - strand, within rhlB at 2816.694 kb on + strand, within rhlB at 2816.695 kb on - strand, within rhlB at 2816.735 kb on + strand, within rhlB at 2816.735 kb on + strand, within rhlB at 2816.759 kb on + strand, within rhlB at 2816.834 kb on + strand, within rhlB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 2,815,312 - -1.4 2,815,523 - +0.6 2,815,764 + trxA OKFHMN_14595 0.55 +0.9 2,815,863 - trxA OKFHMN_14595 0.85 -0.6 2,815,898 - +0.4 2,815,912 + +0.5 2,815,912 + +1.4 2,815,912 + -1.9 2,815,912 + +1.4 2,815,913 - -0.5 2,815,913 - -0.7 2,815,914 + -0.6 2,815,915 - +0.6 2,815,915 - +0.0 2,815,915 - +0.5 2,815,915 - -1.5 2,815,915 - -0.1 2,815,975 + +1.1 2,815,976 - +0.0 2,815,976 - -0.8 2,816,011 - +0.2 2,816,018 + -0.3 2,816,019 - -0.2 2,816,019 - -0.6 2,816,019 - -0.8 2,816,021 + -0.5 2,816,022 - -0.3 2,816,042 + -0.3 2,816,042 + -0.2 2,816,043 - -1.6 2,816,132 + +0.4 2,816,306 - rhlB OKFHMN_14600 0.21 -0.3 2,816,306 - rhlB OKFHMN_14600 0.21 -0.4 2,816,397 + rhlB OKFHMN_14600 0.28 -0.9 2,816,477 - rhlB OKFHMN_14600 0.34 +0.9 2,816,524 + rhlB OKFHMN_14600 0.38 -0.5 2,816,531 - rhlB OKFHMN_14600 0.39 -0.2 2,816,553 + rhlB OKFHMN_14600 0.40 -0.3 2,816,570 + rhlB OKFHMN_14600 0.42 +1.8 2,816,576 + rhlB OKFHMN_14600 0.42 -1.1 2,816,598 - rhlB OKFHMN_14600 0.44 -1.5 2,816,598 - rhlB OKFHMN_14600 0.44 +0.0 2,816,694 + rhlB OKFHMN_14600 0.51 -0.5 2,816,695 - rhlB OKFHMN_14600 0.52 +0.4 2,816,735 + rhlB OKFHMN_14600 0.55 +0.5 2,816,735 + rhlB OKFHMN_14600 0.55 +1.5 2,816,759 + rhlB OKFHMN_14600 0.57 +1.9 2,816,834 + rhlB OKFHMN_14600 0.62 -0.5
Or see this region's nucleotide sequence