Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13540

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,602,797	+	trmA	OKFHMN_13535	0.26	+2.5
2,602,797	+	trmA	OKFHMN_13535	0.26	-2.6
2,602,797	+	trmA	OKFHMN_13535	0.26	-0.4
2,602,835	-	trmA	OKFHMN_13535	0.30	-0.3
2,602,877	-	trmA	OKFHMN_13535	0.34	-1.2
2,602,877	-	trmA	OKFHMN_13535	0.34	+0.3
2,602,881	+	trmA	OKFHMN_13535	0.34	-0.4
2,603,005	+	trmA	OKFHMN_13535	0.45	+0.0
2,603,005	+	trmA	OKFHMN_13535	0.45	-1.0
2,603,005	+	trmA	OKFHMN_13535	0.45	+0.2
2,603,006	-	trmA	OKFHMN_13535	0.45	+0.2
2,603,006	-	trmA	OKFHMN_13535	0.45	-0.6
2,603,048	-	trmA	OKFHMN_13535	0.49	-0.7
2,603,048	-	trmA	OKFHMN_13535	0.49	-0.9
2,603,158	+	trmA	OKFHMN_13535	0.59	-0.9
2,603,159	-	trmA	OKFHMN_13535	0.59	+0.2
2,603,172	+	trmA	OKFHMN_13535	0.60	+0.7
2,603,183	+	trmA	OKFHMN_13535	0.61	-2.4
2,603,213	+	trmA	OKFHMN_13535	0.64	+0.1
2,603,214	-	trmA	OKFHMN_13535	0.64	+0.7
2,603,316	+	trmA	OKFHMN_13535	0.73	-0.0
2,603,370	-	trmA	OKFHMN_13535	0.78	-2.0
2,603,378	-	trmA	OKFHMN_13535	0.79	-0.7
2,603,378	-	trmA	OKFHMN_13535	0.79	-0.6
2,603,460	+	trmA	OKFHMN_13535	0.87	-0.1
2,603,460	+	trmA	OKFHMN_13535	0.87	-0.6
2,603,461	-	trmA	OKFHMN_13535	0.87	+0.0
2,603,467	+	trmA	OKFHMN_13535	0.87	-1.5
2,603,467	+	trmA	OKFHMN_13535	0.87	-0.5
2,603,467	+	trmA	OKFHMN_13535	0.87	-0.1
2,603,467	+	trmA	OKFHMN_13535	0.87	-0.1
2,603,468	-	trmA	OKFHMN_13535	0.87	+0.6
2,603,468	-	trmA	OKFHMN_13535	0.87	-0.5
2,603,468	-	trmA	OKFHMN_13535	0.87	-0.0
2,603,468	-	trmA	OKFHMN_13535	0.87	-1.0
2,603,468	-	trmA	OKFHMN_13535	0.87	-0.2
2,603,470	-	trmA	OKFHMN_13535	0.87	-0.0
2,603,470	-	trmA	OKFHMN_13535	0.87	+0.6
2,603,563	+				+1.5
2,603,588	+				-0.1
2,603,589	-				-0.0
2,603,667	+				+0.0
2,603,668	-				+0.9
2,603,674	-				-0.1
2,603,704	-	yijD	OKFHMN_13540	0.16	-0.0
2,603,704	-	yijD	OKFHMN_13540	0.16	+0.1
2,603,704	-	yijD	OKFHMN_13540	0.16	-0.6
2,603,716	+	yijD	OKFHMN_13540	0.19	+0.3
2,603,717	-	yijD	OKFHMN_13540	0.19	-0.5
2,603,733	+	yijD	OKFHMN_13540	0.24	-0.4
2,603,733	+	yijD	OKFHMN_13540	0.24	-0.6
2,603,734	-	yijD	OKFHMN_13540	0.24	-0.0
2,603,764	+	yijD	OKFHMN_13540	0.33	-0.8
2,603,764	+	yijD	OKFHMN_13540	0.33	-0.8
2,603,765	-	yijD	OKFHMN_13540	0.33	+0.3
2,603,775	-	yijD	OKFHMN_13540	0.36	+0.0
2,603,775	-	yijD	OKFHMN_13540	0.36	-0.2
2,603,783	-	yijD	OKFHMN_13540	0.38	-0.3
2,603,841	+	yijD	OKFHMN_13540	0.54	-0.6
2,603,897	-	yijD	OKFHMN_13540	0.69	+1.3
2,603,919	+	yijD	OKFHMN_13540	0.76	+0.5
2,603,943	+	yijD	OKFHMN_13540	0.82	-1.0
2,603,979	+				-1.2
2,603,979	+				+1.6
2,603,985	+				-0.8
2,603,986	-				-0.1
2,603,986	-				-0.6
2,603,986	-				+0.0
2,603,986	-				-1.2
2,604,067	+				+0.7
2,604,068	-				+1.0
2,604,070	+				+0.7
2,604,070	+				-0.1
2,604,071	-				+1.0
2,604,071	-				+1.0
2,604,118	-	fabR	OKFHMN_13545	0.16	-1.2
2,604,118	-	fabR	OKFHMN_13545	0.16	+1.0
2,604,328	-	fabR	OKFHMN_13545	0.46	+1.0
2,604,331	-	fabR	OKFHMN_13545	0.46	+1.9
2,604,351	-	fabR	OKFHMN_13545	0.49	-0.3
2,604,351	-	fabR	OKFHMN_13545	0.49	+0.6
2,604,369	-	fabR	OKFHMN_13545	0.51	+1.0
2,604,450	+	fabR	OKFHMN_13545	0.63	+1.1
2,604,450	+	fabR	OKFHMN_13545	0.63	+1.6
2,604,451	-	fabR	OKFHMN_13545	0.63	+1.1
2,604,451	-	fabR	OKFHMN_13545	0.63	+1.1
2,604,490	-	fabR	OKFHMN_13545	0.69	+0.9
2,604,585	+	fabR	OKFHMN_13545	0.82	+1.3
2,604,585	+	fabR	OKFHMN_13545	0.82	+1.1
2,604,586	-	fabR	OKFHMN_13545	0.82	+0.9
2,604,594	-	fabR	OKFHMN_13545	0.83	+1.0
2,604,645	+				+1.0
2,604,645	+				+1.0
2,604,693	-				+0.3
2,604,710	+				-0.3
2,604,711	-				+0.6
2,604,711	-				+0.3
2,604,711	-				-1.0
2,604,711	-				-0.4
2,604,726	+				-0.3
2,604,727	-				+0.3
2,604,742	+				+0.0
2,604,751	-				-0.1
2,604,761	+				-0.5
2,604,761	+				-0.9
2,604,788	-				+0.1
2,604,791	+				+0.4
2,604,791	+				+0.6
2,604,791	+				-1.0
2,604,924	+	araJ	OKFHMN_13550	0.12	+0.3
2,604,926	+	araJ	OKFHMN_13550	0.13	+0.1