Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11100

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
2,097,142	+	yaaA	OKFHMN_11090	0.57	+0.0
2,097,143	-	yaaA	OKFHMN_11090	0.58	-0.5
2,097,143	-	yaaA	OKFHMN_11090	0.58	-0.2
2,097,188	-	yaaA	OKFHMN_11090	0.63	+1.3
2,097,199	+	yaaA	OKFHMN_11090	0.65	+0.3
2,097,314	+	yaaA	OKFHMN_11090	0.80	-0.5
2,097,407	+				+0.2
2,097,408	-				-1.8
2,097,408	-				-0.3
2,097,458	+				-0.8
2,097,627	-				+0.9
2,097,682	-	yaaX	OKFHMN_11095	0.19	+0.0
2,097,740	+	yaaX	OKFHMN_11095	0.39	-0.1
2,097,741	-	yaaX	OKFHMN_11095	0.39	-0.1
2,097,801	+	yaaX	OKFHMN_11095	0.59	-0.2
2,097,801	+	yaaX	OKFHMN_11095	0.59	-0.8
2,097,838	+	yaaX	OKFHMN_11095	0.72	+0.1
2,097,843	+	yaaX	OKFHMN_11095	0.73	-0.7
2,097,843	+	yaaX	OKFHMN_11095	0.73	-1.6
2,097,898	+				+0.2
2,097,903	+				+0.0
2,097,904	-				-1.0
2,097,904	-				+0.2
2,097,904	-				-0.1
2,097,935	+				+1.1
2,097,936	-				-0.4
2,097,936	-				-0.1
2,097,969	+				+1.6
2,097,992	+				+0.7
2,098,008	-				-0.5
2,098,096	+				-0.7
2,098,129	+				-0.2
2,098,129	+				-0.2
2,098,130	-				+0.0
2,098,137	-				+0.3
2,098,137	-				+1.5
2,098,189	-				+1.0
2,098,204	+				-0.1
2,098,276	-	thrC	OKFHMN_11100	0.11	+0.8
2,098,354	+	thrC	OKFHMN_11100	0.17	-0.1
2,098,746	-	thrC	OKFHMN_11100	0.47	+0.4
2,098,749	-	thrC	OKFHMN_11100	0.48	-3.1
2,098,978	+	thrC	OKFHMN_11100	0.66	-0.4
2,098,986	-	thrC	OKFHMN_11100	0.66	-0.1
2,099,083	-	thrC	OKFHMN_11100	0.74	-0.7
2,099,083	-	thrC	OKFHMN_11100	0.74	+0.2
2,099,104	-	thrC	OKFHMN_11100	0.75	-0.1
2,099,403	+				+1.2
2,099,412	-				-0.4
2,099,496	-				-0.3
2,099,668	-	thrB	OKFHMN_11105	0.26	-0.1
2,099,772	-	thrB	OKFHMN_11105	0.38	-0.8
2,099,814	+	thrB	OKFHMN_11105	0.42	+0.2
2,099,904	+	thrB	OKFHMN_11105	0.52	+0.2
2,099,905	-	thrB	OKFHMN_11105	0.52	-0.2
2,099,936	+	thrB	OKFHMN_11105	0.55	+0.1
2,099,937	-	thrB	OKFHMN_11105	0.55	-0.0
2,099,937	-	thrB	OKFHMN_11105	0.55	-0.5
2,100,087	+	thrB	OKFHMN_11105	0.71	-0.4
2,100,193	-	thrB	OKFHMN_11105	0.83	+0.1
2,100,250	+	thrB	OKFHMN_11105	0.89	-1.3
2,100,250	+	thrB	OKFHMN_11105	0.89	-0.6
2,100,251	-	thrB	OKFHMN_11105	0.89	-0.4
2,100,251	-	thrB	OKFHMN_11105	0.89	-0.1
2,100,251	-	thrB	OKFHMN_11105	0.89	-0.6
2,100,251	-	thrB	OKFHMN_11105	0.89	+0.4
2,100,251	-	thrB	OKFHMN_11105	0.89	-0.7
2,100,348	+				+1.8
2,100,366	-				-1.1
2,100,382	+				+0.2
2,100,383	-				+0.6
2,100,386	+				+0.4
2,100,386	+				-0.1
2,100,387	-				-0.2