Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09760

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyafL and dinJ are separated by 185 nucleotidesdinJ and dpaA are separated by 434 nucleotides OKFHMN_09755: yafL - putative endopeptidase YafL, at 1,815,209 to 1,815,982 yafL OKFHMN_09760: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 1,816,168 to 1,816,428 dinJ OKFHMN_09765: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 1,816,863 to 1,817,603 dpaA Position (kb) 1816 1817Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1815.342 kb on + strand, within yafLat 1815.343 kb on - strand, within yafLat 1815.353 kb on - strand, within yafLat 1815.447 kb on + strand, within yafLat 1815.447 kb on + strand, within yafLat 1815.448 kb on - strand, within yafLat 1815.448 kb on - strand, within yafLat 1815.448 kb on - strand, within yafLat 1815.495 kb on + strand, within yafLat 1815.517 kb on + strand, within yafLat 1815.558 kb on + strand, within yafLat 1815.558 kb on + strand, within yafLat 1815.558 kb on + strand, within yafLat 1815.558 kb on + strand, within yafLat 1815.559 kb on - strand, within yafLat 1815.610 kb on + strand, within yafLat 1815.611 kb on - strand, within yafLat 1815.774 kb on + strand, within yafLat 1815.775 kb on - strand, within yafLat 1815.775 kb on - strand, within yafLat 1815.865 kb on + strand, within yafLat 1815.865 kb on + strand, within yafLat 1815.866 kb on - strand, within yafLat 1815.866 kb on - strand, within yafLat 1815.866 kb on - strand, within yafLat 1815.958 kb on + strandat 1816.023 kb on - strandat 1816.026 kb on - strandat 1816.063 kb on - strandat 1816.145 kb on + strandat 1816.146 kb on - strandat 1816.232 kb on + strand, within dinJat 1816.233 kb on - strand, within dinJat 1816.406 kb on + strandat 1816.519 kb on + strandat 1816.567 kb on + strandat 1816.705 kb on + strandat 1816.755 kb on + strandat 1816.855 kb on + strandat 1816.855 kb on + strandat 1816.937 kb on + strand, within dpaAat 1816.965 kb on + strand, within dpaAat 1816.966 kb on - strand, within dpaAat 1816.967 kb on + strand, within dpaAat 1816.967 kb on + strand, within dpaAat 1816.968 kb on - strand, within dpaAat 1816.996 kb on - strand, within dpaAat 1817.021 kb on + strand, within dpaAat 1817.055 kb on + strand, within dpaAat 1817.075 kb on + strand, within dpaAat 1817.171 kb on - strand, within dpaAat 1817.190 kb on + strand, within dpaAat 1817.202 kb on - strand, within dpaAat 1817.202 kb on - strand, within dpaAat 1817.224 kb on - strand, within dpaAat 1817.224 kb on - strand, within dpaAat 1817.408 kb on + strand, within dpaAat 1817.421 kb on - strand, within dpaA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,815,342 + yafL OKFHMN_09755 0.17 -1.1
1,815,343 - yafL OKFHMN_09755 0.17 +0.3
1,815,353 - yafL OKFHMN_09755 0.19 +1.7
1,815,447 + yafL OKFHMN_09755 0.31 +0.1
1,815,447 + yafL OKFHMN_09755 0.31 +1.7
1,815,448 - yafL OKFHMN_09755 0.31 -0.5
1,815,448 - yafL OKFHMN_09755 0.31 -0.2
1,815,448 - yafL OKFHMN_09755 0.31 -0.4
1,815,495 + yafL OKFHMN_09755 0.37 +0.4
1,815,517 + yafL OKFHMN_09755 0.40 -1.1
1,815,558 + yafL OKFHMN_09755 0.45 +1.3
1,815,558 + yafL OKFHMN_09755 0.45 -0.1
1,815,558 + yafL OKFHMN_09755 0.45 -0.3
1,815,558 + yafL OKFHMN_09755 0.45 -0.3
1,815,559 - yafL OKFHMN_09755 0.45 +0.7
1,815,610 + yafL OKFHMN_09755 0.52 -0.6
1,815,611 - yafL OKFHMN_09755 0.52 -0.5
1,815,774 + yafL OKFHMN_09755 0.73 +0.1
1,815,775 - yafL OKFHMN_09755 0.73 +0.4
1,815,775 - yafL OKFHMN_09755 0.73 -1.2
1,815,865 + yafL OKFHMN_09755 0.85 -0.3
1,815,865 + yafL OKFHMN_09755 0.85 -0.6
1,815,866 - yafL OKFHMN_09755 0.85 +0.3
1,815,866 - yafL OKFHMN_09755 0.85 +0.4
1,815,866 - yafL OKFHMN_09755 0.85 -1.5
1,815,958 + +0.9
1,816,023 - -0.1
1,816,026 - -0.1
1,816,063 - -0.2
1,816,145 + -1.9
1,816,146 - +1.4
1,816,232 + dinJ OKFHMN_09760 0.25 +0.1
1,816,233 - dinJ OKFHMN_09760 0.25 +0.1
1,816,406 + +0.4
1,816,519 + -1.1
1,816,567 + +1.3
1,816,705 + +1.4
1,816,755 + -0.1
1,816,855 + +1.7
1,816,855 + -2.8
1,816,937 + dpaA OKFHMN_09765 0.10 +0.3
1,816,965 + dpaA OKFHMN_09765 0.14 -0.5
1,816,966 - dpaA OKFHMN_09765 0.14 -0.1
1,816,967 + dpaA OKFHMN_09765 0.14 -0.3
1,816,967 + dpaA OKFHMN_09765 0.14 -0.6
1,816,968 - dpaA OKFHMN_09765 0.14 +1.7
1,816,996 - dpaA OKFHMN_09765 0.18 +2.0
1,817,021 + dpaA OKFHMN_09765 0.21 -0.1
1,817,055 + dpaA OKFHMN_09765 0.26 -0.8
1,817,075 + dpaA OKFHMN_09765 0.29 -0.5
1,817,171 - dpaA OKFHMN_09765 0.42 -0.0
1,817,190 + dpaA OKFHMN_09765 0.44 -0.6
1,817,202 - dpaA OKFHMN_09765 0.46 -0.9
1,817,202 - dpaA OKFHMN_09765 0.46 +0.1
1,817,224 - dpaA OKFHMN_09765 0.49 -0.4
1,817,224 - dpaA OKFHMN_09765 0.49 -0.2
1,817,408 + dpaA OKFHMN_09765 0.74 +0.1
1,817,421 - dpaA OKFHMN_09765 0.75 -0.0

Or see this region's nucleotide sequence