Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09355

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09345 and OKFHMN_09350 are separated by 409 nucleotidesOKFHMN_09350 and OKFHMN_09355 overlap by 1 nucleotidesOKFHMN_09355 and OKFHMN_09360 are separated by 30 nucleotidesOKFHMN_09360 and OKFHMN_09365 overlap by 8 nucleotides OKFHMN_09345: OKFHMN_09345 - Ogr/Delta-like zinc finger, at 1,757,054 to 1,757,326 _09345 OKFHMN_09350: OKFHMN_09350 - hypothetical protein, at 1,757,736 to 1,758,302 _09350 OKFHMN_09355: OKFHMN_09355 - hypothetical protein, at 1,758,302 to 1,758,892 _09355 OKFHMN_09360: OKFHMN_09360 - AAA family ATPase, at 1,758,923 to 1,759,555 _09360 OKFHMN_09365: OKFHMN_09365 - ABC-three component (ABC-3C) system Middle Component 2, at 1,759,548 to 1,760,006 _09365 Position (kb) 1758 1759Strain fitness (log2 ratio) -1 0 1at 1757.417 kb on + strandat 1757.417 kb on + strandat 1757.417 kb on + strandat 1757.419 kb on + strandat 1759.675 kb on + strand, within OKFHMN_09365

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,757,417 + -0.3
1,757,417 + -0.2
1,757,417 + +1.4
1,757,419 + +0.7
1,759,675 + OKFHMN_09365 0.28 -0.1

Or see this region's nucleotide sequence