Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09060

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbetA and OKFHMN_09055 are separated by 1 nucleotidesOKFHMN_09055 and OKFHMN_09060 are separated by 426 nucleotides OKFHMN_09050: betA - choline dehydrogenase, at 1,698,094 to 1,699,782 betA OKFHMN_09055: OKFHMN_09055 - hypothetical protein, at 1,699,784 to 1,700,035 _09055 OKFHMN_09060: OKFHMN_09060 - hypothetical protein, at 1,700,462 to 1,700,596 _09060 Position (kb) 1700 1701Strain fitness (log2 ratio) -1 0 1 2at 1699.537 kb on + strand, within betAat 1699.681 kb on - strandat 1699.838 kb on - strand, within OKFHMN_09055at 1699.839 kb on + strand, within OKFHMN_09055at 1699.839 kb on + strand, within OKFHMN_09055at 1699.849 kb on - strand, within OKFHMN_09055at 1699.927 kb on + strand, within OKFHMN_09055at 1699.928 kb on - strand, within OKFHMN_09055at 1699.931 kb on - strand, within OKFHMN_09055at 1699.987 kb on + strand, within OKFHMN_09055at 1700.037 kb on + strandat 1700.827 kb on + strandat 1701.111 kb on + strandat 1701.560 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,699,537 + betA OKFHMN_09050 0.85 +2.3
1,699,681 - +0.3
1,699,838 - OKFHMN_09055 0.21 -0.5
1,699,839 + OKFHMN_09055 0.22 +0.9
1,699,839 + OKFHMN_09055 0.22 +0.7
1,699,849 - OKFHMN_09055 0.26 -1.1
1,699,927 + OKFHMN_09055 0.57 -0.2
1,699,928 - OKFHMN_09055 0.57 +0.6
1,699,931 - OKFHMN_09055 0.58 -0.6
1,699,987 + OKFHMN_09055 0.81 -0.6
1,700,037 + +1.7
1,700,827 + -0.5
1,701,111 + -0.2
1,701,560 + -0.1

Or see this region's nucleotide sequence