Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_07805 and ybcJ are separated by 1 nucleotides ybcJ and ybcI are separated by 107 nucleotides ybcI and cysS are separated by 35 nucleotides cysS and ppiB are separated by 173 nucleotides ppiB and lpxH are separated by 2 nucleotides
OKFHMN_07805: OKFHMN_07805 - Bifunctional protein FolD, at 1,423,118 to 1,423,984
_07805
OKFHMN_07810: ybcJ - ribosome-associated protein YbcJ, at 1,423,986 to 1,424,198
ybcJ
OKFHMN_07815: ybcI - Inner membrane protein YbcI, at 1,424,306 to 1,424,827
ybcI
OKFHMN_07820: cysS - cysteine--tRNA ligase, at 1,424,863 to 1,426,248
cysS
OKFHMN_07825: ppiB - peptidylprolyl isomerase B, at 1,426,422 to 1,426,916
ppiB
OKFHMN_07830: lpxH - UDP-2,3-diacylglucosamine diphosphatase, at 1,426,919 to 1,427,641
lpxH
Position (kb)
1424
1425
1426
1427 Strain fitness (log2 ratio)
-1
0
1
2 at 1423.961 kb on + strand at 1423.982 kb on + strand at 1423.983 kb on - strand at 1424.003 kb on - strand at 1424.006 kb on + strand at 1424.388 kb on + strand, within ybcI at 1424.456 kb on + strand, within ybcI at 1424.523 kb on + strand, within ybcI at 1424.524 kb on - strand, within ybcI at 1424.856 kb on - strand at 1426.290 kb on - strand at 1426.290 kb on - strand at 1426.290 kb on - strand at 1426.295 kb on - strand at 1426.322 kb on - strand at 1426.322 kb on - strand at 1426.355 kb on + strand at 1426.355 kb on + strand at 1426.368 kb on + strand at 1426.368 kb on + strand at 1426.370 kb on + strand at 1426.370 kb on + strand at 1426.370 kb on + strand at 1426.370 kb on + strand at 1426.370 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand at 1426.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,423,961 + -0.4 1,423,982 + -1.0 1,423,983 - -0.1 1,424,003 - +1.1 1,424,006 + +0.3 1,424,388 + ybcI OKFHMN_07815 0.16 -0.3 1,424,456 + ybcI OKFHMN_07815 0.29 -0.1 1,424,523 + ybcI OKFHMN_07815 0.42 -0.5 1,424,524 - ybcI OKFHMN_07815 0.42 +0.2 1,424,856 - -0.0 1,426,290 - +2.5 1,426,290 - -0.2 1,426,290 - +0.5 1,426,295 - -0.0 1,426,322 - -0.1 1,426,322 - +0.2 1,426,355 + +0.1 1,426,355 + +0.5 1,426,368 + -1.5 1,426,368 + +0.0 1,426,370 + +0.3 1,426,370 + -0.9 1,426,370 + -0.7 1,426,370 + -0.4 1,426,370 + +0.3 1,426,372 + -0.2 1,426,372 + +0.2 1,426,372 + -0.0 1,426,372 + +0.1 1,426,372 + +0.8 1,426,372 + -0.1 1,426,372 + -0.6 1,426,372 + +2.5
Or see this region's nucleotide sequence