Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07730

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpAAR and OKFHMN_07730 are separated by 17 nucleotidesOKFHMN_07730 and rhsA are separated by 168 nucleotides OKFHMN_07725: pAAR - type IV secretion protein Rhs, at 1,400,324 to 1,405,174 pAAR OKFHMN_07730: OKFHMN_07730 - hypothetical protein, at 1,405,192 to 1,405,599 _07730 OKFHMN_07735: rhsA - type IV secretion protein Rhs, at 1,405,768 to 1,407,102 rhsA Position (kb) 1405 1406Strain fitness (log2 ratio) -1 0 1at 1404.195 kb on - strand, within pAARat 1404.215 kb on - strand, within pAARat 1404.404 kb on - strand, within pAARat 1404.665 kb on + strand, within pAARat 1404.712 kb on - strandat 1404.712 kb on - strandat 1404.760 kb on - strandat 1404.870 kb on + strandat 1404.970 kb on + strandat 1405.635 kb on - strandat 1405.822 kb on + strandat 1405.939 kb on + strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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1,404,195 - pAAR OKFHMN_07725 0.80 -0.0
1,404,215 - pAAR OKFHMN_07725 0.80 +0.2
1,404,404 - pAAR OKFHMN_07725 0.84 +1.3
1,404,665 + pAAR OKFHMN_07725 0.89 -0.5
1,404,712 - +0.8
1,404,712 - -0.2
1,404,760 - +1.0
1,404,870 + -1.5
1,404,970 + +1.5
1,405,635 - +0.4
1,405,822 + -0.7
1,405,939 + rhsA OKFHMN_07735 0.13 +0.5

Or see this region's nucleotide sequence