Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhD and pgl are separated by 40 nucleotides pgl and ybhA are separated by 154 nucleotides ybhA and modC are separated by 0 nucleotides
OKFHMN_06670: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 1,188,826 to 1,189,779
ybhD
OKFHMN_06675: pgl - 6-phosphogluconolactonase, at 1,189,820 to 1,190,815
pgl
OKFHMN_06680: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 1,190,970 to 1,191,788
ybhA
OKFHMN_06685: modC - molybdenum ABC transporter ATP-binding protein ModC, at 1,191,789 to 1,192,847
modC
Position (kb) 1189
1190
1191 Strain fitness (log2 ratio) -2
-1
0
1 at 1189.104 kb on + strand, within ybhD at 1189.412 kb on + strand, within ybhD at 1189.514 kb on + strand, within ybhD at 1189.588 kb on - strand, within ybhD at 1189.588 kb on - strand, within ybhD at 1189.780 kb on + strand at 1189.781 kb on - strand at 1189.912 kb on - strand at 1189.954 kb on - strand, within pgl at 1189.954 kb on - strand, within pgl at 1189.972 kb on + strand, within pgl at 1190.085 kb on + strand, within pgl at 1190.086 kb on - strand, within pgl at 1190.086 kb on - strand, within pgl at 1190.086 kb on - strand, within pgl at 1190.086 kb on - strand, within pgl at 1190.087 kb on + strand, within pgl at 1190.087 kb on + strand, within pgl at 1190.088 kb on - strand, within pgl at 1190.088 kb on - strand, within pgl at 1190.088 kb on - strand, within pgl at 1190.088 kb on - strand, within pgl at 1190.088 kb on - strand, within pgl at 1190.117 kb on - strand, within pgl at 1190.244 kb on + strand, within pgl at 1190.251 kb on - strand, within pgl at 1190.302 kb on + strand, within pgl at 1190.354 kb on - strand, within pgl at 1190.416 kb on + strand, within pgl at 1190.416 kb on + strand, within pgl at 1190.515 kb on - strand, within pgl at 1190.515 kb on - strand, within pgl at 1190.523 kb on - strand, within pgl at 1190.664 kb on + strand, within pgl at 1190.665 kb on - strand, within pgl at 1190.671 kb on - strand, within pgl at 1190.798 kb on - strand at 1190.954 kb on + strand at 1190.964 kb on + strand at 1191.034 kb on + strand at 1191.158 kb on + strand, within ybhA at 1191.167 kb on + strand, within ybhA at 1191.177 kb on + strand, within ybhA at 1191.190 kb on - strand, within ybhA at 1191.288 kb on + strand, within ybhA at 1191.288 kb on + strand, within ybhA at 1191.288 kb on + strand, within ybhA at 1191.309 kb on + strand, within ybhA at 1191.310 kb on - strand, within ybhA at 1191.345 kb on - strand, within ybhA at 1191.656 kb on + strand, within ybhA at 1191.741 kb on - strand at 1191.773 kb on + strand at 1191.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,189,104 + ybhD OKFHMN_06670 0.29 +0.1 1,189,412 + ybhD OKFHMN_06670 0.61 +0.4 1,189,514 + ybhD OKFHMN_06670 0.72 -0.4 1,189,588 - ybhD OKFHMN_06670 0.80 -0.0 1,189,588 - ybhD OKFHMN_06670 0.80 -0.7 1,189,780 + -0.6 1,189,781 - -1.4 1,189,912 - +0.5 1,189,954 - pgl OKFHMN_06675 0.13 -0.5 1,189,954 - pgl OKFHMN_06675 0.13 -2.6 1,189,972 + pgl OKFHMN_06675 0.15 -0.5 1,190,085 + pgl OKFHMN_06675 0.27 -0.9 1,190,086 - pgl OKFHMN_06675 0.27 -0.3 1,190,086 - pgl OKFHMN_06675 0.27 -0.5 1,190,086 - pgl OKFHMN_06675 0.27 +1.5 1,190,086 - pgl OKFHMN_06675 0.27 -0.9 1,190,087 + pgl OKFHMN_06675 0.27 -0.9 1,190,087 + pgl OKFHMN_06675 0.27 -0.5 1,190,088 - pgl OKFHMN_06675 0.27 -0.1 1,190,088 - pgl OKFHMN_06675 0.27 +1.1 1,190,088 - pgl OKFHMN_06675 0.27 -0.4 1,190,088 - pgl OKFHMN_06675 0.27 -0.9 1,190,088 - pgl OKFHMN_06675 0.27 +0.9 1,190,117 - pgl OKFHMN_06675 0.30 -0.1 1,190,244 + pgl OKFHMN_06675 0.43 -0.9 1,190,251 - pgl OKFHMN_06675 0.43 -0.1 1,190,302 + pgl OKFHMN_06675 0.48 +0.6 1,190,354 - pgl OKFHMN_06675 0.54 -1.1 1,190,416 + pgl OKFHMN_06675 0.60 -0.1 1,190,416 + pgl OKFHMN_06675 0.60 -0.6 1,190,515 - pgl OKFHMN_06675 0.70 -1.8 1,190,515 - pgl OKFHMN_06675 0.70 -1.2 1,190,523 - pgl OKFHMN_06675 0.71 +0.5 1,190,664 + pgl OKFHMN_06675 0.85 +0.2 1,190,665 - pgl OKFHMN_06675 0.85 -1.3 1,190,671 - pgl OKFHMN_06675 0.85 -0.0 1,190,798 - +0.0 1,190,954 + +1.5 1,190,964 + -0.1 1,191,034 + -0.3 1,191,158 + ybhA OKFHMN_06680 0.23 -0.1 1,191,167 + ybhA OKFHMN_06680 0.24 -0.9 1,191,177 + ybhA OKFHMN_06680 0.25 +0.1 1,191,190 - ybhA OKFHMN_06680 0.27 +0.6 1,191,288 + ybhA OKFHMN_06680 0.39 -0.1 1,191,288 + ybhA OKFHMN_06680 0.39 +0.5 1,191,288 + ybhA OKFHMN_06680 0.39 -0.9 1,191,309 + ybhA OKFHMN_06680 0.41 +0.1 1,191,310 - ybhA OKFHMN_06680 0.42 -0.1 1,191,345 - ybhA OKFHMN_06680 0.46 +0.2 1,191,656 + ybhA OKFHMN_06680 0.84 +1.0 1,191,741 - -1.7 1,191,773 + +1.0 1,191,774 - -1.5
Or see this region's nucleotide sequence