Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_06565 and OKFHMN_06570 are separated by 621 nucleotides OKFHMN_06570 and OKFHMN_06575 are separated by 99 nucleotides OKFHMN_06575 and OKFHMN_06580 overlap by 62 nucleotides OKFHMN_06580 and OKFHMN_06585 are separated by 183 nucleotides
OKFHMN_06565: OKFHMN_06565 - holin, at 1,171,253 to 1,171,468
_06565
OKFHMN_06570: OKFHMN_06570 - DUF3927 domain-containing protein, at 1,172,090 to 1,172,170
_06570
OKFHMN_06575: OKFHMN_06575 - hypothetical protein, at 1,172,270 to 1,172,395
_06575
OKFHMN_06580: OKFHMN_06580 - Membrane protein, at 1,172,334 to 1,173,077
_06580
OKFHMN_06585: OKFHMN_06585 - antitermination protein, at 1,173,261 to 1,173,950
_06585
Position (kb)
1172
1173 Strain fitness (log2 ratio)
-1
0
1
2 at 1171.299 kb on + strand, within OKFHMN_06565 at 1171.465 kb on - strand at 1171.541 kb on + strand at 1171.551 kb on - strand at 1171.551 kb on - strand at 1171.564 kb on + strand at 1171.565 kb on - strand at 1171.576 kb on + strand at 1171.590 kb on - strand at 1171.590 kb on - strand at 1171.593 kb on + strand at 1171.593 kb on + strand at 1171.616 kb on - strand at 1171.616 kb on - strand at 1171.619 kb on + strand at 1171.619 kb on + strand at 1171.712 kb on + strand at 1171.733 kb on + strand at 1171.746 kb on + strand at 1171.948 kb on + strand at 1171.968 kb on - strand at 1171.998 kb on - strand at 1173.169 kb on + strand at 1173.176 kb on - strand at 1173.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 1,171,299 + OKFHMN_06565 0.21 -0.5 1,171,465 - -0.9 1,171,541 + -1.6 1,171,551 - -0.2 1,171,551 - -0.9 1,171,564 + -0.6 1,171,565 - +0.4 1,171,576 + -0.5 1,171,590 - +0.1 1,171,590 - -0.3 1,171,593 + -0.3 1,171,593 + -0.2 1,171,616 - -0.5 1,171,616 - -1.0 1,171,619 + -1.2 1,171,619 + +0.2 1,171,712 + +0.4 1,171,733 + -0.6 1,171,746 + +1.4 1,171,948 + -0.6 1,171,968 - +0.3 1,171,998 - +1.8 1,173,169 + +0.3 1,173,176 - -0.2 1,173,252 - -0.8
Or see this region's nucleotide sequence