Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05660

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrssA and OKFHMN_05660 overlap by 4 nucleotidesOKFHMN_05660 and OKFHMN_05665 overlap by 4 nucleotides OKFHMN_05655: rssA - phospholipase, at 964,456 to 965,526 rssA OKFHMN_05660: OKFHMN_05660 - chemotaxis protein, at 965,523 to 966,428 _05660 OKFHMN_05665: OKFHMN_05665 - dGTPase, at 966,425 to 968,809 _05665 Position (kb) 965 966 967Strain fitness (log2 ratio) -1 0 1at 965.469 kb on - strandat 966.379 kb on - strandat 966.470 kb on - strandat 966.515 kb on - strandat 966.515 kb on - strandat 966.545 kb on - strandat 966.681 kb on + strand, within OKFHMN_05665at 966.725 kb on - strand, within OKFHMN_05665at 966.756 kb on + strand, within OKFHMN_05665at 966.899 kb on + strand, within OKFHMN_05665

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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965,469 - +0.4
966,379 - +0.3
966,470 - -0.9
966,515 - -0.4
966,515 - +0.4
966,545 - +0.0
966,681 + OKFHMN_05665 0.11 +0.4
966,725 - OKFHMN_05665 0.13 -1.0
966,756 + OKFHMN_05665 0.14 -0.2
966,899 + OKFHMN_05665 0.20 +0.4

Or see this region's nucleotide sequence