Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04960

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnu1 and OKFHMN_04960 are separated by 750 nucleotidesOKFHMN_04960 and OKFHMN_04965 are separated by 255 nucleotidesOKFHMN_04965 and OKFHMN_04970 are separated by 159 nucleotides OKFHMN_04955: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 828,768 to 829,043 nu1 OKFHMN_04960: OKFHMN_04960 - holin, at 829,794 to 830,000 _04960 OKFHMN_04965: OKFHMN_04965 - hypothetical protein, at 830,256 to 830,528 _04965 OKFHMN_04970: OKFHMN_04970 - lysozyme, at 830,688 to 831,221 _04970 Position (kb) 829 830 831Strain fitness (log2 ratio) -1 0 1 2at 829.565 kb on + strandat 829.565 kb on + strandat 829.999 kb on - strandat 830.016 kb on + strandat 830.341 kb on - strand, within OKFHMN_04965at 830.484 kb on - strand, within OKFHMN_04965at 830.530 kb on - strandat 830.572 kb on + strandat 830.572 kb on + strandat 830.573 kb on - strandat 830.653 kb on + strandat 830.877 kb on - strand, within OKFHMN_04970

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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829,565 + +0.4
829,565 + +0.7
829,999 - +0.8
830,016 + +0.3
830,341 - OKFHMN_04965 0.31 -0.1
830,484 - OKFHMN_04965 0.84 +1.4
830,530 - +0.7
830,572 + -0.2
830,572 + -1.6
830,573 - +2.4
830,653 + -0.5
830,877 - OKFHMN_04970 0.35 -0.4

Or see this region's nucleotide sequence