Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04580

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntefeO and efeU are separated by 57 nucleotidesefeU and OKFHMN_04585 are separated by 35 nucleotides OKFHMN_04575: efeO - iron uptake system protein EfeO, at 752,412 to 753,539 efeO OKFHMN_04580: efeU - Ferrous iron permease EfeU, at 753,597 to 754,427 efeU OKFHMN_04585: OKFHMN_04585 - hypothetical protein, at 754,463 to 754,609 _04585 Position (kb) 753 754 755Strain fitness (log2 ratio) -2 -1 0 1 2at 752.837 kb on - strand, within efeOat 752.837 kb on - strand, within efeOat 752.837 kb on - strand, within efeOat 753.125 kb on - strand, within efeOat 753.125 kb on - strand, within efeOat 753.131 kb on + strand, within efeOat 753.245 kb on - strand, within efeOat 753.372 kb on - strand, within efeOat 753.519 kb on - strandat 753.548 kb on + strandat 753.548 kb on + strandat 753.668 kb on - strandat 753.672 kb on - strandat 754.132 kb on - strand, within efeUat 754.354 kb on + strandat 754.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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752,837 - efeO OKFHMN_04575 0.38 -0.9
752,837 - efeO OKFHMN_04575 0.38 +0.1
752,837 - efeO OKFHMN_04575 0.38 -0.1
753,125 - efeO OKFHMN_04575 0.63 +0.8
753,125 - efeO OKFHMN_04575 0.63 +0.3
753,131 + efeO OKFHMN_04575 0.64 -0.6
753,245 - efeO OKFHMN_04575 0.74 +0.6
753,372 - efeO OKFHMN_04575 0.85 +2.0
753,519 - -0.4
753,548 + +0.1
753,548 + -1.2
753,668 - +0.1
753,672 - +0.4
754,132 - efeU OKFHMN_04580 0.64 -2.5
754,354 + +1.1
754,462 + +0.4

Or see this region's nucleotide sequence