Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03320

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_03310 and rusA overlap by 4 nucleotidesrusA and OKFHMN_03320 are separated by 12 nucleotidesOKFHMN_03320 and OKFHMN_03325 are separated by 447 nucleotidesOKFHMN_03325 and OKFHMN_03335 are separated by 188 nucleotides OKFHMN_03310: OKFHMN_03310 - antitermination protein, at 522,085 to 522,906 _03310 OKFHMN_03315: rusA - Endodeoxyribonuclease RusA, at 522,903 to 523,277 rusA OKFHMN_03320: OKFHMN_03320 - DUF968 domain-containing protein, at 523,290 to 524,339 _03320 OKFHMN_03325: OKFHMN_03325 - protein hokC, at 524,787 to 524,999 _03325 OKFHMN_03335: OKFHMN_03335 - hypothetical protein, at 525,188 to 525,292 _03335 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1at 522.298 kb on - strand, within OKFHMN_03310at 522.308 kb on - strand, within OKFHMN_03310at 522.407 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310at 525.042 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
522,298 - OKFHMN_03310 0.26 +0.3
522,308 - OKFHMN_03310 0.27 +0.0
522,407 - OKFHMN_03310 0.39 +0.1
522,616 - OKFHMN_03310 0.65 +1.3
522,616 - OKFHMN_03310 0.65 -2.8
522,616 - OKFHMN_03310 0.65 +1.1
525,042 + +0.4

Or see this region's nucleotide sequence