Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02700

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntespM1 and nleG are separated by 183 nucleotides OKFHMN_02700: espM1 - T3SS effector guanine nucleotide exchange factor EspM1, at 432,648 to 433,238 espM1 OKFHMN_02705: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 433,422 to 434,069 nleG Position (kb) 432 433 434Strain fitness (log2 ratio) -3 -2 -1 0 1at 432.135 kb on - strandat 432.243 kb on + strandat 432.304 kb on - strandat 432.395 kb on - strandat 432.468 kb on - strandat 432.524 kb on - strandat 432.564 kb on - strandat 432.589 kb on + strandat 432.634 kb on - strandat 432.850 kb on - strand, within espM1at 432.879 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.231 kb on - strandat 433.314 kb on + strandat 433.900 kb on + strand, within nleG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
432,135 - +0.5
432,243 + +0.1
432,304 - +1.1
432,395 - -0.5
432,468 - -0.9
432,524 - -0.8
432,564 - -0.0
432,589 + -1.3
432,634 - -0.3
432,850 - espM1 OKFHMN_02700 0.34 -0.1
432,879 - espM1 OKFHMN_02700 0.39 -2.9
433,009 - espM1 OKFHMN_02700 0.61 -0.9
433,009 - espM1 OKFHMN_02700 0.61 -0.6
433,231 - +0.4
433,314 + +0.1
433,900 + nleG OKFHMN_02705 0.74 -0.7

Or see this region's nucleotide sequence