Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01620

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcL and tehB are separated by 303 nucleotidestehB and tehA overlap by 4 nucleotides OKFHMN_01615: ydcL - Uncharacterized lipoprotein YdcL, at 230,430 to 231,098 ydcL OKFHMN_01620: tehB - tellurite resistance methyltransferase TehB, at 231,402 to 231,995 tehB OKFHMN_01625: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 231,992 to 232,984 tehA Position (kb) 231 232Strain fitness (log2 ratio) -1 0 1at 230.490 kb on - strandat 230.492 kb on + strandat 230.535 kb on - strand, within ydcLat 231.274 kb on - strandat 232.017 kb on - strandat 232.243 kb on - strand, within tehAat 232.574 kb on - strand, within tehAat 232.940 kb on - strandat 232.948 kb on - strandat 232.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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230,490 - +0.2
230,492 + +0.3
230,535 - ydcL OKFHMN_01615 0.16 +0.2
231,274 - -0.8
232,017 - +0.0
232,243 - tehA OKFHMN_01625 0.25 -0.5
232,574 - tehA OKFHMN_01625 0.59 +0.6
232,940 - +0.2
232,948 - +0.6
232,973 - +0.6

Or see this region's nucleotide sequence