Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_00685 and OKFHMN_00690 are separated by 126 nucleotides OKFHMN_00690 and OKFHMN_00695 are separated by 251 nucleotides OKFHMN_00695 and OKFHMN_00700 are separated by 85 nucleotides OKFHMN_00700 and OKFHMN_00705 are separated by 12 nucleotides OKFHMN_00705 and OKFHMN_00710 are separated by 12 nucleotides OKFHMN_00710 and OKFHMN_00715 are separated by 205 nucleotides
OKFHMN_00685: OKFHMN_00685 - PerC family transcriptional regulator, at 41,696 to 41,968
_00685
OKFHMN_00690: OKFHMN_00690 - hypothetical protein, at 42,095 to 42,319
_00690
OKFHMN_00695: OKFHMN_00695 - Putative prophage protein, at 42,571 to 42,690
_00695
OKFHMN_00700: OKFHMN_00700 - capsid protein, at 42,776 to 43,831
_00700
OKFHMN_00705: OKFHMN_00705 - head decoration protein, at 43,844 to 44,179
_00705
OKFHMN_00710: OKFHMN_00710 - phage head-tail connector protein, at 44,192 to 44,605
_00710
OKFHMN_00715: OKFHMN_00715 - terminase, at 44,811 to 45,353
_00715
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 41.906 kb on + strand, within OKFHMN_00685 at 41.922 kb on + strand, within OKFHMN_00685 at 41.922 kb on + strand, within OKFHMN_00685 at 41.966 kb on + strand at 41.966 kb on + strand at 42.051 kb on + strand at 42.055 kb on + strand at 42.567 kb on + strand at 42.608 kb on + strand, within OKFHMN_00695 at 42.608 kb on + strand, within OKFHMN_00695 at 43.114 kb on + strand, within OKFHMN_00700 at 43.571 kb on + strand, within OKFHMN_00700 at 43.844 kb on - strand at 44.282 kb on + strand, within OKFHMN_00710 at 44.282 kb on + strand, within OKFHMN_00710 at 44.369 kb on + strand, within OKFHMN_00710 at 44.407 kb on + strand, within OKFHMN_00710 at 44.407 kb on + strand, within OKFHMN_00710 at 44.448 kb on + strand, within OKFHMN_00710 at 44.448 kb on + strand, within OKFHMN_00710 at 44.482 kb on + strand, within OKFHMN_00710 at 44.546 kb on + strand, within OKFHMN_00710 at 44.796 kb on + strand at 44.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 41,906 + OKFHMN_00685 0.77 +0.6 41,922 + OKFHMN_00685 0.83 +0.4 41,922 + OKFHMN_00685 0.83 +0.6 41,966 + +1.7 41,966 + +0.2 42,051 + +0.3 42,055 + -0.4 42,567 + -0.9 42,608 + OKFHMN_00695 0.31 +0.8 42,608 + OKFHMN_00695 0.31 -1.1 43,114 + OKFHMN_00700 0.32 -1.1 43,571 + OKFHMN_00700 0.75 -0.1 43,844 - -1.4 44,282 + OKFHMN_00710 0.22 +2.0 44,282 + OKFHMN_00710 0.22 -0.8 44,369 + OKFHMN_00710 0.43 +2.2 44,407 + OKFHMN_00710 0.52 +2.8 44,407 + OKFHMN_00710 0.52 +1.2 44,448 + OKFHMN_00710 0.62 -0.1 44,448 + OKFHMN_00710 0.62 +1.2 44,482 + OKFHMN_00710 0.70 -1.9 44,546 + OKFHMN_00710 0.86 +0.2 44,796 + +0.2 44,807 - +1.2
Or see this region's nucleotide sequence