Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xkdP and OKGIIK_13780 are separated by 128 nucleotides OKGIIK_13780 and fmt overlap by 4 nucleotides fmt and rsmB overlap by 4 nucleotides
OKGIIK_13775: xkdP - peptidoglycan-binding protein, at 2,994,124 to 2,995,245
xkdP
OKGIIK_13780: OKGIIK_13780 - Peptide deformylase 2, at 2,995,374 to 2,995,943
_13780
OKGIIK_13785: fmt - methionyl-tRNA formyltransferase, at 2,995,940 to 2,996,881
fmt
OKGIIK_13790: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 2,996,878 to 2,998,179
rsmB
Position (kb)
2995
2996
2997 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2995.031 kb on + strand, within xkdP at 2995.031 kb on + strand, within xkdP at 2995.031 kb on + strand, within xkdP at 2995.031 kb on + strand, within xkdP at 2995.031 kb on + strand, within xkdP at 2995.032 kb on - strand, within xkdP at 2995.032 kb on - strand, within xkdP at 2995.032 kb on - strand, within xkdP at 2995.032 kb on - strand, within xkdP at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.148 kb on + strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.149 kb on - strand at 2995.190 kb on + strand at 2995.190 kb on + strand at 2995.190 kb on + strand at 2995.190 kb on + strand at 2995.190 kb on + strand at 2995.191 kb on + strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.191 kb on - strand at 2995.230 kb on + strand at 2995.230 kb on + strand at 2995.230 kb on + strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.231 kb on - strand at 2995.283 kb on + strand at 2995.295 kb on + strand at 2995.334 kb on + strand at 2995.334 kb on + strand at 2995.335 kb on - strand at 2995.354 kb on + strand at 2995.355 kb on - strand at 2995.355 kb on - strand at 2995.355 kb on - strand at 2995.355 kb on - strand at 2995.355 kb on - strand at 2995.355 kb on - strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.371 kb on + strand at 2995.395 kb on + strand at 2997.104 kb on + strand, within rsmB at 2997.105 kb on - strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.160 kb on + strand, within rsmB at 2997.161 kb on - strand, within rsmB at 2997.161 kb on - strand, within rsmB at 2997.161 kb on - strand, within rsmB at 2997.161 kb on - strand, within rsmB at 2997.863 kb on + strand, within rsmB at 2997.863 kb on + strand, within rsmB at 2997.864 kb on - strand, within rsmB at 2997.864 kb on - strand, within rsmB
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,995,031 + xkdP OKGIIK_13775 0.81 +0.7 2,995,031 + xkdP OKGIIK_13775 0.81 -1.3 2,995,031 + xkdP OKGIIK_13775 0.81 -0.9 2,995,031 + xkdP OKGIIK_13775 0.81 -0.4 2,995,031 + xkdP OKGIIK_13775 0.81 +1.5 2,995,032 - xkdP OKGIIK_13775 0.81 -0.5 2,995,032 - xkdP OKGIIK_13775 0.81 +0.4 2,995,032 - xkdP OKGIIK_13775 0.81 +1.4 2,995,032 - xkdP OKGIIK_13775 0.81 -1.6 2,995,148 + -0.5 2,995,148 + -0.1 2,995,148 + -0.4 2,995,148 + +0.9 2,995,148 + +0.4 2,995,148 + -0.6 2,995,148 + +0.6 2,995,148 + +0.2 2,995,148 + -0.8 2,995,148 + +0.4 2,995,148 + +0.0 2,995,148 + +1.0 2,995,148 + +0.2 2,995,148 + +0.6 2,995,148 + +1.8 2,995,148 + -1.2 2,995,148 + +0.7 2,995,149 - +0.5 2,995,149 - +0.5 2,995,149 - -1.2 2,995,149 - -0.3 2,995,149 - -1.8 2,995,149 - -0.8 2,995,149 - +2.4 2,995,149 - +0.0 2,995,149 - -0.2 2,995,149 - -0.1 2,995,149 - +0.9 2,995,149 - +0.9 2,995,149 - -2.5 2,995,149 - +0.5 2,995,149 - +1.4 2,995,149 - -1.0 2,995,149 - -0.5 2,995,149 - +1.1 2,995,149 - -0.6 2,995,149 - -0.6 2,995,149 - +1.2 2,995,149 - -1.0 2,995,190 + -1.6 2,995,190 + +0.1 2,995,190 + -1.0 2,995,190 + +1.0 2,995,190 + -1.0 2,995,191 + -0.7 2,995,191 - -1.6 2,995,191 - +0.3 2,995,191 - +0.3 2,995,191 - -0.2 2,995,191 - -0.4 2,995,191 - -1.6 2,995,191 - +0.4 2,995,191 - +0.6 2,995,191 - -0.3 2,995,191 - -1.8 2,995,230 + -0.5 2,995,230 + +0.0 2,995,230 + +0.4 2,995,231 - -0.3 2,995,231 - +0.4 2,995,231 - +0.8 2,995,231 - +0.4 2,995,231 - -1.2 2,995,231 - +0.2 2,995,231 - -0.2 2,995,283 + -1.3 2,995,295 + -0.6 2,995,334 + -1.8 2,995,334 + -0.3 2,995,335 - +0.0 2,995,354 + +0.4 2,995,355 - +2.0 2,995,355 - -0.3 2,995,355 - -2.7 2,995,355 - -0.0 2,995,355 - -0.5 2,995,355 - +0.7 2,995,371 + +0.6 2,995,371 + -1.4 2,995,371 + +0.2 2,995,371 + -0.1 2,995,371 + -1.6 2,995,371 + +0.2 2,995,371 + -0.8 2,995,371 + -0.2 2,995,371 + +1.1 2,995,371 + -1.7 2,995,371 + -2.5 2,995,371 + -1.7 2,995,371 + -0.8 2,995,371 + -0.4 2,995,371 + -0.4 2,995,371 + +0.9 2,995,395 + +0.5 2,997,104 + rsmB OKGIIK_13790 0.17 +2.0 2,997,105 - rsmB OKGIIK_13790 0.17 -0.6 2,997,160 + rsmB OKGIIK_13790 0.22 -1.0 2,997,160 + rsmB OKGIIK_13790 0.22 +1.4 2,997,160 + rsmB OKGIIK_13790 0.22 -0.8 2,997,160 + rsmB OKGIIK_13790 0.22 -1.6 2,997,160 + rsmB OKGIIK_13790 0.22 -0.3 2,997,160 + rsmB OKGIIK_13790 0.22 -2.2 2,997,160 + rsmB OKGIIK_13790 0.22 -0.3 2,997,160 + rsmB OKGIIK_13790 0.22 +0.0 2,997,161 - rsmB OKGIIK_13790 0.22 -0.4 2,997,161 - rsmB OKGIIK_13790 0.22 -0.4 2,997,161 - rsmB OKGIIK_13790 0.22 +0.1 2,997,161 - rsmB OKGIIK_13790 0.22 -1.3 2,997,863 + rsmB OKGIIK_13790 0.76 -2.0 2,997,863 + rsmB OKGIIK_13790 0.76 -0.4 2,997,864 - rsmB OKGIIK_13790 0.76 +0.0 2,997,864 - rsmB OKGIIK_13790 0.76 +0.4
Or see this region's nucleotide sequence