Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13785

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxkdP and OKGIIK_13780 are separated by 128 nucleotidesOKGIIK_13780 and fmt overlap by 4 nucleotidesfmt and rsmB overlap by 4 nucleotides OKGIIK_13775: xkdP - peptidoglycan-binding protein, at 2,994,124 to 2,995,245 xkdP OKGIIK_13780: OKGIIK_13780 - Peptide deformylase 2, at 2,995,374 to 2,995,943 _13780 OKGIIK_13785: fmt - methionyl-tRNA formyltransferase, at 2,995,940 to 2,996,881 fmt OKGIIK_13790: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 2,996,878 to 2,998,179 rsmB Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -2 -1 0 1 2at 2995.031 kb on + strand, within xkdPat 2995.031 kb on + strand, within xkdPat 2995.031 kb on + strand, within xkdPat 2995.031 kb on + strand, within xkdPat 2995.031 kb on + strand, within xkdPat 2995.032 kb on - strand, within xkdPat 2995.032 kb on - strand, within xkdPat 2995.032 kb on - strand, within xkdPat 2995.032 kb on - strand, within xkdPat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.148 kb on + strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.190 kb on + strandat 2995.190 kb on + strandat 2995.190 kb on + strandat 2995.190 kb on + strandat 2995.190 kb on + strandat 2995.191 kb on + strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.191 kb on - strandat 2995.230 kb on + strandat 2995.230 kb on + strandat 2995.230 kb on + strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.231 kb on - strandat 2995.283 kb on + strandat 2995.295 kb on + strandat 2995.334 kb on + strandat 2995.334 kb on + strandat 2995.335 kb on - strandat 2995.354 kb on + strandat 2995.355 kb on - strandat 2995.355 kb on - strandat 2995.355 kb on - strandat 2995.355 kb on - strandat 2995.355 kb on - strandat 2995.355 kb on - strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.371 kb on + strandat 2995.395 kb on + strandat 2997.104 kb on + strand, within rsmBat 2997.105 kb on - strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.160 kb on + strand, within rsmBat 2997.161 kb on - strand, within rsmBat 2997.161 kb on - strand, within rsmBat 2997.161 kb on - strand, within rsmBat 2997.161 kb on - strand, within rsmBat 2997.863 kb on + strand, within rsmBat 2997.863 kb on + strand, within rsmBat 2997.864 kb on - strand, within rsmBat 2997.864 kb on - strand, within rsmB

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,995,031 + xkdP OKGIIK_13775 0.81 +0.7
2,995,031 + xkdP OKGIIK_13775 0.81 -1.3
2,995,031 + xkdP OKGIIK_13775 0.81 -0.9
2,995,031 + xkdP OKGIIK_13775 0.81 -0.4
2,995,031 + xkdP OKGIIK_13775 0.81 +1.5
2,995,032 - xkdP OKGIIK_13775 0.81 -0.5
2,995,032 - xkdP OKGIIK_13775 0.81 +0.4
2,995,032 - xkdP OKGIIK_13775 0.81 +1.4
2,995,032 - xkdP OKGIIK_13775 0.81 -1.6
2,995,148 + -0.5
2,995,148 + -0.1
2,995,148 + -0.4
2,995,148 + +0.9
2,995,148 + +0.4
2,995,148 + -0.6
2,995,148 + +0.6
2,995,148 + +0.2
2,995,148 + -0.8
2,995,148 + +0.4
2,995,148 + +0.0
2,995,148 + +1.0
2,995,148 + +0.2
2,995,148 + +0.6
2,995,148 + +1.8
2,995,148 + -1.2
2,995,148 + +0.7
2,995,149 - +0.5
2,995,149 - +0.5
2,995,149 - -1.2
2,995,149 - -0.3
2,995,149 - -1.8
2,995,149 - -0.8
2,995,149 - +2.4
2,995,149 - +0.0
2,995,149 - -0.2
2,995,149 - -0.1
2,995,149 - +0.9
2,995,149 - +0.9
2,995,149 - -2.5
2,995,149 - +0.5
2,995,149 - +1.4
2,995,149 - -1.0
2,995,149 - -0.5
2,995,149 - +1.1
2,995,149 - -0.6
2,995,149 - -0.6
2,995,149 - +1.2
2,995,149 - -1.0
2,995,190 + -1.6
2,995,190 + +0.1
2,995,190 + -1.0
2,995,190 + +1.0
2,995,190 + -1.0
2,995,191 + -0.7
2,995,191 - -1.6
2,995,191 - +0.3
2,995,191 - +0.3
2,995,191 - -0.2
2,995,191 - -0.4
2,995,191 - -1.6
2,995,191 - +0.4
2,995,191 - +0.6
2,995,191 - -0.3
2,995,191 - -1.8
2,995,230 + -0.5
2,995,230 + +0.0
2,995,230 + +0.4
2,995,231 - -0.3
2,995,231 - +0.4
2,995,231 - +0.8
2,995,231 - +0.4
2,995,231 - -1.2
2,995,231 - +0.2
2,995,231 - -0.2
2,995,283 + -1.3
2,995,295 + -0.6
2,995,334 + -1.8
2,995,334 + -0.3
2,995,335 - +0.0
2,995,354 + +0.4
2,995,355 - +2.0
2,995,355 - -0.3
2,995,355 - -2.7
2,995,355 - -0.0
2,995,355 - -0.5
2,995,355 - +0.7
2,995,371 + +0.6
2,995,371 + -1.4
2,995,371 + +0.2
2,995,371 + -0.1
2,995,371 + -1.6
2,995,371 + +0.2
2,995,371 + -0.8
2,995,371 + -0.2
2,995,371 + +1.1
2,995,371 + -1.7
2,995,371 + -2.5
2,995,371 + -1.7
2,995,371 + -0.8
2,995,371 + -0.4
2,995,371 + -0.4
2,995,371 + +0.9
2,995,395 + +0.5
2,997,104 + rsmB OKGIIK_13790 0.17 +2.0
2,997,105 - rsmB OKGIIK_13790 0.17 -0.6
2,997,160 + rsmB OKGIIK_13790 0.22 -1.0
2,997,160 + rsmB OKGIIK_13790 0.22 +1.4
2,997,160 + rsmB OKGIIK_13790 0.22 -0.8
2,997,160 + rsmB OKGIIK_13790 0.22 -1.6
2,997,160 + rsmB OKGIIK_13790 0.22 -0.3
2,997,160 + rsmB OKGIIK_13790 0.22 -2.2
2,997,160 + rsmB OKGIIK_13790 0.22 -0.3
2,997,160 + rsmB OKGIIK_13790 0.22 +0.0
2,997,161 - rsmB OKGIIK_13790 0.22 -0.4
2,997,161 - rsmB OKGIIK_13790 0.22 -0.4
2,997,161 - rsmB OKGIIK_13790 0.22 +0.1
2,997,161 - rsmB OKGIIK_13790 0.22 -1.3
2,997,863 + rsmB OKGIIK_13790 0.76 -2.0
2,997,863 + rsmB OKGIIK_13790 0.76 -0.4
2,997,864 - rsmB OKGIIK_13790 0.76 +0.0
2,997,864 - rsmB OKGIIK_13790 0.76 +0.4

Or see this region's nucleotide sequence