Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07415

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_07410 and OKGIIK_07415 are separated by 94 nucleotidesOKGIIK_07415 and OKGIIK_07420 are separated by 177 nucleotidesOKGIIK_07420 and Leu_trna are separated by 216 nucleotidesLeu_trna and secG are separated by 11 nucleotides OKGIIK_07410: OKGIIK_07410 - Ribonuclease E, at 1,635,595 to 1,638,744 _07410 OKGIIK_07415: OKGIIK_07415 - DNA-binding response regulator, at 1,638,839 to 1,639,492 _07415 OKGIIK_07420: OKGIIK_07420 - hypothetical protein, at 1,639,670 to 1,639,906 _07420 OKGIIK_07425: Leu_trna - tRNA-Leu, at 1,640,123 to 1,640,207 _trna OKGIIK_07430: secG - preprotein translocase subunit SecG, at 1,640,219 to 1,640,671 secG Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1638.234 kb on + strand, within OKGIIK_07410at 1638.234 kb on + strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.235 kb on - strand, within OKGIIK_07410at 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.565 kb on + strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.566 kb on - strandat 1638.798 kb on + strandat 1638.798 kb on + strandat 1638.798 kb on + strandat 1638.865 kb on + strandat 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.948 kb on + strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1638.949 kb on - strand, within OKGIIK_07415at 1639.122 kb on + strand, within OKGIIK_07415at 1639.122 kb on + strand, within OKGIIK_07415at 1639.123 kb on - strand, within OKGIIK_07415at 1639.123 kb on - strand, within OKGIIK_07415at 1639.191 kb on + strand, within OKGIIK_07415at 1639.191 kb on + strand, within OKGIIK_07415at 1639.297 kb on + strand, within OKGIIK_07415at 1639.297 kb on + strand, within OKGIIK_07415at 1639.298 kb on - strand, within OKGIIK_07415at 1639.360 kb on + strand, within OKGIIK_07415at 1639.360 kb on + strand, within OKGIIK_07415at 1639.360 kb on + strand, within OKGIIK_07415at 1639.361 kb on - strand, within OKGIIK_07415at 1639.361 kb on - strand, within OKGIIK_07415at 1639.361 kb on - strand, within OKGIIK_07415at 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.493 kb on + strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.494 kb on - strandat 1639.526 kb on + strandat 1639.526 kb on + strandat 1639.526 kb on + strandat 1639.526 kb on + strandat 1639.526 kb on + strandat 1639.527 kb on - strandat 1639.527 kb on - strandat 1639.776 kb on + strand, within OKGIIK_07420at 1639.776 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.790 kb on + strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.791 kb on - strand, within OKGIIK_07420at 1639.897 kb on + strandat 1639.897 kb on + strandat 1639.897 kb on + strandat 1639.897 kb on + strandat 1639.897 kb on + strandat 1639.898 kb on - strandat 1639.898 kb on - strandat 1639.913 kb on + strandat 1639.913 kb on + strandat 1639.913 kb on + strandat 1639.913 kb on + strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.914 kb on - strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.965 kb on + strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.966 kb on - strandat 1639.981 kb on + strandat 1639.981 kb on + strandat 1639.981 kb on + strandat 1639.981 kb on + strandat 1639.981 kb on + strandat 1639.981 kb on + strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1639.982 kb on - strandat 1640.017 kb on + strandat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secGat 1640.455 kb on - strand, within secG

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,638,234 + OKGIIK_07410 0.84 -0.7
1,638,234 + OKGIIK_07410 0.84 +0.3
1,638,235 - OKGIIK_07410 0.84 +0.1
1,638,235 - OKGIIK_07410 0.84 +1.0
1,638,235 - OKGIIK_07410 0.84 +0.8
1,638,235 - OKGIIK_07410 0.84 -0.3
1,638,235 - OKGIIK_07410 0.84 +0.6
1,638,235 - OKGIIK_07410 0.84 -0.1
1,638,235 - OKGIIK_07410 0.84 +0.7
1,638,565 + -0.4
1,638,565 + -2.2
1,638,565 + -0.6
1,638,565 + -0.3
1,638,565 + +0.3
1,638,565 + -2.1
1,638,565 + -0.4
1,638,565 + -0.1
1,638,565 + +0.5
1,638,565 + +0.5
1,638,565 + -1.6
1,638,566 - +0.0
1,638,566 - -0.3
1,638,566 - +0.7
1,638,566 - +0.5
1,638,566 - -0.2
1,638,566 - +1.7
1,638,566 - -0.2
1,638,566 - -0.3
1,638,566 - -1.9
1,638,566 - -0.0
1,638,566 - +0.2
1,638,798 + +0.8
1,638,798 + -0.6
1,638,798 + -1.9
1,638,865 + -0.8
1,638,948 + OKGIIK_07415 0.17 -0.3
1,638,948 + OKGIIK_07415 0.17 +1.7
1,638,948 + OKGIIK_07415 0.17 -0.5
1,638,948 + OKGIIK_07415 0.17 -0.3
1,638,948 + OKGIIK_07415 0.17 +0.7
1,638,948 + OKGIIK_07415 0.17 -1.8
1,638,948 + OKGIIK_07415 0.17 -3.2
1,638,948 + OKGIIK_07415 0.17 -0.5
1,638,948 + OKGIIK_07415 0.17 -1.8
1,638,948 + OKGIIK_07415 0.17 +0.3
1,638,948 + OKGIIK_07415 0.17 -0.1
1,638,948 + OKGIIK_07415 0.17 +0.3
1,638,948 + OKGIIK_07415 0.17 -0.1
1,638,948 + OKGIIK_07415 0.17 -0.0
1,638,948 + OKGIIK_07415 0.17 -0.1
1,638,948 + OKGIIK_07415 0.17 +0.3
1,638,948 + OKGIIK_07415 0.17 +0.9
1,638,948 + OKGIIK_07415 0.17 +0.0
1,638,948 + OKGIIK_07415 0.17 +1.2
1,638,948 + OKGIIK_07415 0.17 -0.9
1,638,948 + OKGIIK_07415 0.17 +0.7
1,638,948 + OKGIIK_07415 0.17 -1.5
1,638,948 + OKGIIK_07415 0.17 -0.9
1,638,948 + OKGIIK_07415 0.17 -0.8
1,638,948 + OKGIIK_07415 0.17 +1.9
1,638,948 + OKGIIK_07415 0.17 -0.9
1,638,949 - OKGIIK_07415 0.17 -0.2
1,638,949 - OKGIIK_07415 0.17 -0.4
1,638,949 - OKGIIK_07415 0.17 -0.3
1,638,949 - OKGIIK_07415 0.17 +1.4
1,638,949 - OKGIIK_07415 0.17 +1.6
1,638,949 - OKGIIK_07415 0.17 -0.5
1,638,949 - OKGIIK_07415 0.17 +1.7
1,638,949 - OKGIIK_07415 0.17 -1.6
1,638,949 - OKGIIK_07415 0.17 +0.4
1,638,949 - OKGIIK_07415 0.17 -0.3
1,638,949 - OKGIIK_07415 0.17 +0.1
1,638,949 - OKGIIK_07415 0.17 -1.6
1,639,122 + OKGIIK_07415 0.43 +0.4
1,639,122 + OKGIIK_07415 0.43 -0.6
1,639,123 - OKGIIK_07415 0.43 -1.4
1,639,123 - OKGIIK_07415 0.43 +0.9
1,639,191 + OKGIIK_07415 0.54 -0.8
1,639,191 + OKGIIK_07415 0.54 -0.4
1,639,297 + OKGIIK_07415 0.70 +0.1
1,639,297 + OKGIIK_07415 0.70 +0.7
1,639,298 - OKGIIK_07415 0.70 +0.1
1,639,360 + OKGIIK_07415 0.80 +0.4
1,639,360 + OKGIIK_07415 0.80 +0.3
1,639,360 + OKGIIK_07415 0.80 -0.9
1,639,361 - OKGIIK_07415 0.80 -1.0
1,639,361 - OKGIIK_07415 0.80 +0.2
1,639,361 - OKGIIK_07415 0.80 -0.0
1,639,493 + +0.2
1,639,493 + +0.4
1,639,493 + -0.8
1,639,493 + -0.8
1,639,493 + -0.9
1,639,493 + +0.1
1,639,493 + +1.3
1,639,493 + -0.9
1,639,493 + +1.0
1,639,494 - -1.1
1,639,494 - -0.8
1,639,494 - -1.3
1,639,494 - -0.7
1,639,494 - -0.1
1,639,494 - -0.6
1,639,494 - -0.6
1,639,494 - -1.7
1,639,494 - -0.1
1,639,494 - +0.1
1,639,494 - -0.2
1,639,494 - +0.8
1,639,494 - -0.3
1,639,526 + -1.1
1,639,526 + -0.4
1,639,526 + -0.2
1,639,526 + -1.6
1,639,526 + -1.1
1,639,527 - -0.4
1,639,527 - -0.6
1,639,776 + OKGIIK_07420 0.45 +0.4
1,639,776 + OKGIIK_07420 0.45 -0.9
1,639,790 + OKGIIK_07420 0.51 -0.3
1,639,790 + OKGIIK_07420 0.51 -0.8
1,639,790 + OKGIIK_07420 0.51 -0.4
1,639,790 + OKGIIK_07420 0.51 -1.6
1,639,790 + OKGIIK_07420 0.51 +0.3
1,639,790 + OKGIIK_07420 0.51 -2.0
1,639,790 + OKGIIK_07420 0.51 +0.2
1,639,790 + OKGIIK_07420 0.51 -0.6
1,639,790 + OKGIIK_07420 0.51 +0.4
1,639,790 + OKGIIK_07420 0.51 +0.2
1,639,790 + OKGIIK_07420 0.51 -0.2
1,639,790 + OKGIIK_07420 0.51 -0.1
1,639,790 + OKGIIK_07420 0.51 -1.3
1,639,790 + OKGIIK_07420 0.51 -0.3
1,639,790 + OKGIIK_07420 0.51 +1.0
1,639,790 + OKGIIK_07420 0.51 +1.9
1,639,790 + OKGIIK_07420 0.51 +0.2
1,639,790 + OKGIIK_07420 0.51 +2.0
1,639,790 + OKGIIK_07420 0.51 -0.3
1,639,790 + OKGIIK_07420 0.51 +0.1
1,639,791 - OKGIIK_07420 0.51 +0.3
1,639,791 - OKGIIK_07420 0.51 -1.0
1,639,791 - OKGIIK_07420 0.51 +0.7
1,639,791 - OKGIIK_07420 0.51 -0.2
1,639,791 - OKGIIK_07420 0.51 -0.1
1,639,791 - OKGIIK_07420 0.51 +0.5
1,639,791 - OKGIIK_07420 0.51 -1.5
1,639,791 - OKGIIK_07420 0.51 +0.7
1,639,791 - OKGIIK_07420 0.51 -1.6
1,639,791 - OKGIIK_07420 0.51 -0.1
1,639,791 - OKGIIK_07420 0.51 +0.6
1,639,897 + +1.4
1,639,897 + -0.6
1,639,897 + -0.6
1,639,897 + -0.1
1,639,897 + +0.9
1,639,898 - +0.8
1,639,898 - -0.5
1,639,913 + -0.2
1,639,913 + -1.5
1,639,913 + +1.7
1,639,913 + -0.2
1,639,914 - +0.4
1,639,914 - -1.0
1,639,914 - -0.5
1,639,914 - -1.1
1,639,914 - -1.6
1,639,914 - -0.5
1,639,914 - +0.4
1,639,965 + -1.9
1,639,965 + -0.3
1,639,965 + +1.0
1,639,965 + +0.3
1,639,965 + -0.7
1,639,965 + -0.1
1,639,965 + +0.7
1,639,965 + -0.4
1,639,965 + -0.0
1,639,966 - -1.1
1,639,966 - -2.0
1,639,966 - -1.0
1,639,966 - -1.0
1,639,966 - +0.0
1,639,966 - +0.7
1,639,966 - +1.3
1,639,966 - -0.6
1,639,966 - -0.9
1,639,966 - -0.2
1,639,966 - -0.2
1,639,966 - +1.7
1,639,966 - -2.0
1,639,981 + -0.3
1,639,981 + -1.3
1,639,981 + +0.9
1,639,981 + -0.8
1,639,981 + -0.0
1,639,981 + +0.3
1,639,982 - -2.0
1,639,982 - +0.0
1,639,982 - -0.2
1,639,982 - -0.2
1,639,982 - -0.8
1,639,982 - +0.4
1,639,982 - -0.6
1,639,982 - -0.9
1,640,017 + +0.2
1,640,455 - secG OKGIIK_07430 0.52 +0.4
1,640,455 - secG OKGIIK_07430 0.52 -1.2
1,640,455 - secG OKGIIK_07430 0.52 -0.4
1,640,455 - secG OKGIIK_07430 0.52 -2.5
1,640,455 - secG OKGIIK_07430 0.52 +1.4
1,640,455 - secG OKGIIK_07430 0.52 -1.0
1,640,455 - secG OKGIIK_07430 0.52 -1.1
1,640,455 - secG OKGIIK_07430 0.52 +0.1
1,640,455 - secG OKGIIK_07430 0.52 -0.1
1,640,455 - secG OKGIIK_07430 0.52 -1.9
1,640,455 - secG OKGIIK_07430 0.52 -0.4
1,640,455 - secG OKGIIK_07430 0.52 -0.9
1,640,455 - secG OKGIIK_07430 0.52 -0.8
1,640,455 - secG OKGIIK_07430 0.52 -0.3
1,640,455 - secG OKGIIK_07430 0.52 -0.6
1,640,455 - secG OKGIIK_07430 0.52 -0.9
1,640,455 - secG OKGIIK_07430 0.52 -0.4
1,640,455 - secG OKGIIK_07430 0.52 +0.6
1,640,455 - secG OKGIIK_07430 0.52 -1.5
1,640,455 - secG OKGIIK_07430 0.52 -1.9

Or see this region's nucleotide sequence