Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gdhA and OKGIIK_04055 are separated by 228 nucleotides OKGIIK_04055 and bepA are separated by 72 nucleotides bepA and OKGIIK_04065 are separated by 109 nucleotides OKGIIK_04065 and OKGIIK_04070 are separated by 27 nucleotides
OKGIIK_04050: gdhA - leucine dehydrogenase, at 887,705 to 888,808
gdhA
OKGIIK_04055: OKGIIK_04055 - Putative signal peptide protein, at 889,037 to 889,363
_04055
OKGIIK_04060: bepA - peptidase, at 889,436 to 890,233
bepA
OKGIIK_04065: OKGIIK_04065 - TetR family transcriptional regulator, at 890,343 to 890,945
_04065
OKGIIK_04070: OKGIIK_04070 - Hydrolase, at 890,973 to 891,890
_04070
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.438 kb on + strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.439 kb on - strand, within gdhA at 888.483 kb on + strand, within gdhA at 888.483 kb on + strand, within gdhA at 888.484 kb on - strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.669 kb on + strand, within gdhA at 888.670 kb on - strand, within gdhA at 888.670 kb on - strand, within gdhA at 888.670 kb on - strand, within gdhA at 888.670 kb on - strand, within gdhA at 888.670 kb on - strand, within gdhA at 888.830 kb on + strand at 888.830 kb on + strand at 888.830 kb on + strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.831 kb on - strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.849 kb on + strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.850 kb on - strand at 888.956 kb on + strand at 888.956 kb on + strand at 888.957 kb on - strand at 888.959 kb on + strand at 888.959 kb on + strand at 888.959 kb on + strand at 888.959 kb on + strand at 888.959 kb on + strand at 888.959 kb on + strand at 888.960 kb on - strand at 888.960 kb on - strand at 888.960 kb on - strand at 889.051 kb on - strand at 889.104 kb on + strand, within OKGIIK_04055 at 889.105 kb on - strand, within OKGIIK_04055 at 889.105 kb on - strand, within OKGIIK_04055 at 889.105 kb on - strand, within OKGIIK_04055 at 889.127 kb on + strand, within OKGIIK_04055 at 889.194 kb on + strand, within OKGIIK_04055 at 889.293 kb on + strand, within OKGIIK_04055 at 889.293 kb on + strand, within OKGIIK_04055 at 889.293 kb on + strand, within OKGIIK_04055 at 889.293 kb on + strand, within OKGIIK_04055 at 889.294 kb on - strand, within OKGIIK_04055 at 889.294 kb on - strand, within OKGIIK_04055 at 889.294 kb on - strand, within OKGIIK_04055 at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.354 kb on + strand at 889.355 kb on - strand at 889.355 kb on - strand at 889.355 kb on - strand at 889.355 kb on - strand at 889.482 kb on + strand at 889.482 kb on + strand at 889.482 kb on + strand at 889.482 kb on + strand at 889.483 kb on - strand at 889.483 kb on - strand at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.644 kb on + strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.645 kb on - strand, within bepA at 889.770 kb on + strand, within bepA at 889.770 kb on + strand, within bepA at 889.771 kb on - strand, within bepA at 889.771 kb on - strand, within bepA at 889.771 kb on - strand, within bepA at 889.771 kb on - strand, within bepA at 889.771 kb on - strand, within bepA at 889.771 kb on - strand, within bepA at 890.049 kb on + strand, within bepA at 890.049 kb on + strand, within bepA at 890.049 kb on + strand, within bepA at 890.049 kb on + strand, within bepA at 890.049 kb on + strand, within bepA at 890.050 kb on - strand, within bepA at 890.050 kb on - strand, within bepA at 890.269 kb on + strand at 890.270 kb on - strand at 890.313 kb on - strand at 890.406 kb on + strand, within OKGIIK_04065 at 890.407 kb on - strand, within OKGIIK_04065 at 890.407 kb on - strand, within OKGIIK_04065 at 890.688 kb on + strand, within OKGIIK_04065 at 890.688 kb on + strand, within OKGIIK_04065 at 890.688 kb on + strand, within OKGIIK_04065 at 890.689 kb on - strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.835 kb on + strand, within OKGIIK_04065 at 890.836 kb on - strand, within OKGIIK_04065 at 890.836 kb on - strand, within OKGIIK_04065 at 890.836 kb on - strand, within OKGIIK_04065 at 890.836 kb on - strand, within OKGIIK_04065 at 890.836 kb on - strand, within OKGIIK_04065 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.195 kb on + strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070 at 891.196 kb on - strand, within OKGIIK_04070
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 888,438 + gdhA OKGIIK_04050 0.66 -1.5 888,438 + gdhA OKGIIK_04050 0.66 -1.2 888,438 + gdhA OKGIIK_04050 0.66 +0.3 888,438 + gdhA OKGIIK_04050 0.66 +0.5 888,438 + gdhA OKGIIK_04050 0.66 -0.7 888,438 + gdhA OKGIIK_04050 0.66 -1.0 888,438 + gdhA OKGIIK_04050 0.66 -0.6 888,438 + gdhA OKGIIK_04050 0.66 -0.6 888,438 + gdhA OKGIIK_04050 0.66 +0.7 888,438 + gdhA OKGIIK_04050 0.66 -1.1 888,438 + gdhA OKGIIK_04050 0.66 -1.9 888,438 + gdhA OKGIIK_04050 0.66 +0.6 888,438 + gdhA OKGIIK_04050 0.66 -0.5 888,438 + gdhA OKGIIK_04050 0.66 +0.9 888,438 + gdhA OKGIIK_04050 0.66 -1.1 888,438 + gdhA OKGIIK_04050 0.66 +0.7 888,438 + gdhA OKGIIK_04050 0.66 +0.7 888,438 + gdhA OKGIIK_04050 0.66 +0.2 888,439 - gdhA OKGIIK_04050 0.66 -0.2 888,439 - gdhA OKGIIK_04050 0.66 -0.5 888,439 - gdhA OKGIIK_04050 0.66 +0.2 888,439 - gdhA OKGIIK_04050 0.66 +0.3 888,439 - gdhA OKGIIK_04050 0.66 +0.9 888,439 - gdhA OKGIIK_04050 0.66 -0.8 888,439 - gdhA OKGIIK_04050 0.66 +0.4 888,439 - gdhA OKGIIK_04050 0.66 -1.8 888,439 - gdhA OKGIIK_04050 0.66 -1.1 888,439 - gdhA OKGIIK_04050 0.66 +1.4 888,439 - gdhA OKGIIK_04050 0.66 +0.2 888,439 - gdhA OKGIIK_04050 0.66 +0.6 888,439 - gdhA OKGIIK_04050 0.66 -0.7 888,439 - gdhA OKGIIK_04050 0.66 -1.3 888,439 - gdhA OKGIIK_04050 0.66 +1.1 888,439 - gdhA OKGIIK_04050 0.66 +0.1 888,439 - gdhA OKGIIK_04050 0.66 -0.4 888,439 - gdhA OKGIIK_04050 0.66 -0.7 888,439 - gdhA OKGIIK_04050 0.66 -0.6 888,439 - gdhA OKGIIK_04050 0.66 -1.4 888,439 - gdhA OKGIIK_04050 0.66 +0.4 888,439 - gdhA OKGIIK_04050 0.66 -1.1 888,439 - gdhA OKGIIK_04050 0.66 +0.3 888,439 - gdhA OKGIIK_04050 0.66 -0.7 888,439 - gdhA OKGIIK_04050 0.66 -0.7 888,439 - gdhA OKGIIK_04050 0.66 -0.7 888,439 - gdhA OKGIIK_04050 0.66 -1.3 888,439 - gdhA OKGIIK_04050 0.66 -0.2 888,439 - gdhA OKGIIK_04050 0.66 -1.8 888,483 + gdhA OKGIIK_04050 0.70 -1.0 888,483 + gdhA OKGIIK_04050 0.70 -0.7 888,484 - gdhA OKGIIK_04050 0.71 +1.0 888,669 + gdhA OKGIIK_04050 0.87 -0.3 888,669 + gdhA OKGIIK_04050 0.87 -0.1 888,669 + gdhA OKGIIK_04050 0.87 -0.7 888,669 + gdhA OKGIIK_04050 0.87 -0.5 888,669 + gdhA OKGIIK_04050 0.87 -1.9 888,669 + gdhA OKGIIK_04050 0.87 +0.4 888,669 + gdhA OKGIIK_04050 0.87 -1.3 888,669 + gdhA OKGIIK_04050 0.87 -1.6 888,669 + gdhA OKGIIK_04050 0.87 +1.7 888,669 + gdhA OKGIIK_04050 0.87 -1.0 888,669 + gdhA OKGIIK_04050 0.87 -0.3 888,669 + gdhA OKGIIK_04050 0.87 +0.6 888,670 - gdhA OKGIIK_04050 0.87 -2.0 888,670 - gdhA OKGIIK_04050 0.87 +0.3 888,670 - gdhA OKGIIK_04050 0.87 +1.1 888,670 - gdhA OKGIIK_04050 0.87 -0.1 888,670 - gdhA OKGIIK_04050 0.87 -0.3 888,830 + -0.4 888,830 + +0.5 888,830 + +0.7 888,831 - +1.0 888,831 - -1.1 888,831 - -0.2 888,831 - -0.2 888,831 - -1.5 888,831 - +1.2 888,831 - +0.9 888,831 - -0.0 888,849 + -0.4 888,849 + -0.9 888,849 + -1.1 888,849 + -1.3 888,849 + -2.0 888,849 + +1.2 888,849 + +1.7 888,850 - +0.3 888,850 - -0.1 888,850 - -1.1 888,850 - +0.9 888,850 - -0.7 888,850 - -1.1 888,850 - -1.9 888,850 - -0.7 888,850 - +0.1 888,850 - -2.2 888,850 - -1.5 888,850 - +0.0 888,850 - +0.3 888,850 - +0.3 888,850 - -1.9 888,850 - -1.1 888,850 - -0.3 888,850 - -1.1 888,850 - +0.1 888,850 - +0.4 888,850 - -0.3 888,850 - -0.3 888,850 - +0.3 888,850 - +1.3 888,850 - +0.6 888,850 - +0.2 888,850 - -0.7 888,956 + -0.6 888,956 + +0.1 888,957 - +0.1 888,959 + +0.4 888,959 + -2.2 888,959 + +0.2 888,959 + -0.1 888,959 + -0.6 888,959 + +0.1 888,960 - +0.3 888,960 - -0.4 888,960 - -1.0 889,051 - -0.7 889,104 + OKGIIK_04055 0.20 -0.2 889,105 - OKGIIK_04055 0.21 -0.4 889,105 - OKGIIK_04055 0.21 -0.5 889,105 - OKGIIK_04055 0.21 -0.4 889,127 + OKGIIK_04055 0.28 -0.2 889,194 + OKGIIK_04055 0.48 +0.1 889,293 + OKGIIK_04055 0.78 -0.3 889,293 + OKGIIK_04055 0.78 -1.1 889,293 + OKGIIK_04055 0.78 -2.5 889,293 + OKGIIK_04055 0.78 +1.3 889,294 - OKGIIK_04055 0.79 -0.7 889,294 - OKGIIK_04055 0.79 +0.4 889,294 - OKGIIK_04055 0.79 -1.2 889,354 + -2.7 889,354 + -0.3 889,354 + +0.8 889,354 + +0.2 889,354 + +1.7 889,354 + -1.8 889,354 + +0.9 889,354 + -0.5 889,354 + -0.3 889,354 + -0.3 889,355 - -0.4 889,355 - +0.3 889,355 - -1.1 889,355 - -0.1 889,482 + +0.0 889,482 + -0.7 889,482 + +0.9 889,482 + -0.3 889,483 - +0.2 889,483 - +0.2 889,644 + bepA OKGIIK_04060 0.26 -0.3 889,644 + bepA OKGIIK_04060 0.26 +0.1 889,644 + bepA OKGIIK_04060 0.26 -1.1 889,644 + bepA OKGIIK_04060 0.26 -0.8 889,644 + bepA OKGIIK_04060 0.26 -0.7 889,644 + bepA OKGIIK_04060 0.26 +0.3 889,644 + bepA OKGIIK_04060 0.26 +1.0 889,644 + bepA OKGIIK_04060 0.26 +0.7 889,644 + bepA OKGIIK_04060 0.26 -1.3 889,645 - bepA OKGIIK_04060 0.26 +0.2 889,645 - bepA OKGIIK_04060 0.26 -0.3 889,645 - bepA OKGIIK_04060 0.26 -0.3 889,645 - bepA OKGIIK_04060 0.26 -0.3 889,645 - bepA OKGIIK_04060 0.26 +0.9 889,645 - bepA OKGIIK_04060 0.26 +0.7 889,645 - bepA OKGIIK_04060 0.26 +0.5 889,645 - bepA OKGIIK_04060 0.26 -0.3 889,645 - bepA OKGIIK_04060 0.26 -0.2 889,645 - bepA OKGIIK_04060 0.26 +0.3 889,770 + bepA OKGIIK_04060 0.42 +0.7 889,770 + bepA OKGIIK_04060 0.42 +0.4 889,771 - bepA OKGIIK_04060 0.42 -0.7 889,771 - bepA OKGIIK_04060 0.42 -0.5 889,771 - bepA OKGIIK_04060 0.42 -0.0 889,771 - bepA OKGIIK_04060 0.42 -1.1 889,771 - bepA OKGIIK_04060 0.42 -0.8 889,771 - bepA OKGIIK_04060 0.42 -0.3 890,049 + bepA OKGIIK_04060 0.77 +0.1 890,049 + bepA OKGIIK_04060 0.77 -0.4 890,049 + bepA OKGIIK_04060 0.77 -0.3 890,049 + bepA OKGIIK_04060 0.77 -1.1 890,049 + bepA OKGIIK_04060 0.77 +0.1 890,050 - bepA OKGIIK_04060 0.77 +0.3 890,050 - bepA OKGIIK_04060 0.77 -2.1 890,269 + +0.7 890,270 - +2.0 890,313 - +0.8 890,406 + OKGIIK_04065 0.10 -0.1 890,407 - OKGIIK_04065 0.11 -1.3 890,407 - OKGIIK_04065 0.11 -1.3 890,688 + OKGIIK_04065 0.57 +0.9 890,688 + OKGIIK_04065 0.57 -0.9 890,688 + OKGIIK_04065 0.57 -0.9 890,689 - OKGIIK_04065 0.57 +0.1 890,835 + OKGIIK_04065 0.82 -0.1 890,835 + OKGIIK_04065 0.82 +0.7 890,835 + OKGIIK_04065 0.82 -1.3 890,835 + OKGIIK_04065 0.82 -1.2 890,835 + OKGIIK_04065 0.82 -1.1 890,835 + OKGIIK_04065 0.82 +0.0 890,835 + OKGIIK_04065 0.82 +0.7 890,835 + OKGIIK_04065 0.82 -3.0 890,835 + OKGIIK_04065 0.82 -0.0 890,835 + OKGIIK_04065 0.82 -0.6 890,835 + OKGIIK_04065 0.82 -1.3 890,835 + OKGIIK_04065 0.82 -1.2 890,836 - OKGIIK_04065 0.82 -1.3 890,836 - OKGIIK_04065 0.82 +0.4 890,836 - OKGIIK_04065 0.82 -0.3 890,836 - OKGIIK_04065 0.82 +1.0 890,836 - OKGIIK_04065 0.82 -0.4 891,195 + OKGIIK_04070 0.24 +0.7 891,195 + OKGIIK_04070 0.24 -0.0 891,195 + OKGIIK_04070 0.24 +2.1 891,195 + OKGIIK_04070 0.24 -1.1 891,195 + OKGIIK_04070 0.24 +0.2 891,195 + OKGIIK_04070 0.24 -0.2 891,195 + OKGIIK_04070 0.24 -0.3 891,195 + OKGIIK_04070 0.24 +0.9 891,195 + OKGIIK_04070 0.24 -1.1 891,195 + OKGIIK_04070 0.24 +0.5 891,195 + OKGIIK_04070 0.24 +0.9 891,195 + OKGIIK_04070 0.24 +1.0 891,195 + OKGIIK_04070 0.24 -1.1 891,195 + OKGIIK_04070 0.24 +0.3 891,195 + OKGIIK_04070 0.24 -1.6 891,195 + OKGIIK_04070 0.24 -1.1 891,195 + OKGIIK_04070 0.24 -0.3 891,196 - OKGIIK_04070 0.24 -0.3 891,196 - OKGIIK_04070 0.24 +0.3 891,196 - OKGIIK_04070 0.24 -0.6 891,196 - OKGIIK_04070 0.24 +0.9 891,196 - OKGIIK_04070 0.24 +0.2 891,196 - OKGIIK_04070 0.24 -1.7 891,196 - OKGIIK_04070 0.24 -1.1 891,196 - OKGIIK_04070 0.24 -1.7 891,196 - OKGIIK_04070 0.24 -1.9 891,196 - OKGIIK_04070 0.24 +0.1 891,196 - OKGIIK_04070 0.24 -1.0 891,196 - OKGIIK_04070 0.24 -0.7
Or see this region's nucleotide sequence