Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01770

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucD and OKGIIK_01770 are separated by 70 nucleotidesOKGIIK_01770 and OKGIIK_01775 are separated by 205 nucleotidesOKGIIK_01775 and OKGIIK_01780 are separated by 65 nucleotides OKGIIK_01765: sucD - succinate--CoA ligase subunit alpha, at 408,962 to 409,837 sucD OKGIIK_01770: OKGIIK_01770 - Transcriptional regulator ArgP, at 409,908 to 410,813 _01770 OKGIIK_01775: OKGIIK_01775 - L-lysine exporter family protein LysE/ArgO, at 411,019 to 411,636 _01775 OKGIIK_01780: OKGIIK_01780 - NAD+ synthase, at 411,702 to 413,387 _01780 Position (kb) 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 408.940 kb on + strandat 408.940 kb on + strandat 410.008 kb on + strand, within OKGIIK_01770at 410.008 kb on + strand, within OKGIIK_01770at 410.008 kb on + strand, within OKGIIK_01770at 410.008 kb on + strand, within OKGIIK_01770at 410.008 kb on + strand, within OKGIIK_01770at 410.008 kb on + strand, within OKGIIK_01770at 410.009 kb on - strand, within OKGIIK_01770at 410.009 kb on - strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.152 kb on + strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.153 kb on - strand, within OKGIIK_01770at 410.317 kb on + strand, within OKGIIK_01770at 410.317 kb on + strand, within OKGIIK_01770at 410.317 kb on + strand, within OKGIIK_01770at 410.317 kb on + strand, within OKGIIK_01770at 410.318 kb on - strand, within OKGIIK_01770at 410.318 kb on - strand, within OKGIIK_01770at 410.318 kb on - strand, within OKGIIK_01770at 410.318 kb on - strand, within OKGIIK_01770at 410.487 kb on + strand, within OKGIIK_01770at 410.487 kb on + strand, within OKGIIK_01770at 410.488 kb on - strand, within OKGIIK_01770at 410.699 kb on + strand, within OKGIIK_01770at 410.699 kb on + strand, within OKGIIK_01770at 410.699 kb on + strand, within OKGIIK_01770at 410.700 kb on - strand, within OKGIIK_01770at 410.700 kb on - strand, within OKGIIK_01770at 410.932 kb on + strandat 410.951 kb on + strandat 410.951 kb on + strandat 410.952 kb on - strandat 410.962 kb on - strandat 410.962 kb on - strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.024 kb on + strandat 411.025 kb on - strandat 411.025 kb on - strandat 411.034 kb on + strandat 411.034 kb on + strandat 411.034 kb on + strandat 411.035 kb on - strandat 411.076 kb on - strandat 411.242 kb on - strand, within OKGIIK_01775at 411.242 kb on - strand, within OKGIIK_01775at 411.242 kb on - strand, within OKGIIK_01775at 411.269 kb on - strand, within OKGIIK_01775at 411.269 kb on - strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.397 kb on + strand, within OKGIIK_01775at 411.398 kb on - strand, within OKGIIK_01775at 411.398 kb on - strand, within OKGIIK_01775at 411.398 kb on - strand, within OKGIIK_01775at 411.398 kb on - strand, within OKGIIK_01775at 411.439 kb on + strand, within OKGIIK_01775at 411.439 kb on + strand, within OKGIIK_01775at 411.514 kb on + strand, within OKGIIK_01775at 411.514 kb on + strand, within OKGIIK_01775at 411.514 kb on + strand, within OKGIIK_01775at 411.515 kb on - strand, within OKGIIK_01775at 411.515 kb on - strand, within OKGIIK_01775at 411.515 kb on - strand, within OKGIIK_01775at 411.669 kb on + strandat 411.669 kb on + strandat 411.669 kb on + strandat 411.669 kb on + strandat 411.669 kb on + strandat 411.669 kb on + strandat 411.669 kb on + strandat 411.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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408,940 + -0.8
408,940 + -0.9
410,008 + OKGIIK_01770 0.11 +1.6
410,008 + OKGIIK_01770 0.11 +1.6
410,008 + OKGIIK_01770 0.11 +0.2
410,008 + OKGIIK_01770 0.11 -0.8
410,008 + OKGIIK_01770 0.11 -1.6
410,008 + OKGIIK_01770 0.11 -1.0
410,009 - OKGIIK_01770 0.11 -0.3
410,009 - OKGIIK_01770 0.11 +0.4
410,152 + OKGIIK_01770 0.27 +0.6
410,152 + OKGIIK_01770 0.27 -2.5
410,152 + OKGIIK_01770 0.27 +0.5
410,152 + OKGIIK_01770 0.27 -0.2
410,152 + OKGIIK_01770 0.27 -0.2
410,152 + OKGIIK_01770 0.27 -0.1
410,152 + OKGIIK_01770 0.27 -0.4
410,152 + OKGIIK_01770 0.27 +0.6
410,152 + OKGIIK_01770 0.27 -0.5
410,152 + OKGIIK_01770 0.27 +0.2
410,152 + OKGIIK_01770 0.27 -1.0
410,153 - OKGIIK_01770 0.27 -2.3
410,153 - OKGIIK_01770 0.27 +1.6
410,153 - OKGIIK_01770 0.27 +0.3
410,153 - OKGIIK_01770 0.27 -0.5
410,153 - OKGIIK_01770 0.27 +1.2
410,153 - OKGIIK_01770 0.27 +1.9
410,153 - OKGIIK_01770 0.27 -1.2
410,153 - OKGIIK_01770 0.27 -0.4
410,153 - OKGIIK_01770 0.27 -1.0
410,153 - OKGIIK_01770 0.27 +1.1
410,317 + OKGIIK_01770 0.45 +0.6
410,317 + OKGIIK_01770 0.45 -0.4
410,317 + OKGIIK_01770 0.45 +0.7
410,317 + OKGIIK_01770 0.45 -3.0
410,318 - OKGIIK_01770 0.45 +1.9
410,318 - OKGIIK_01770 0.45 +0.9
410,318 - OKGIIK_01770 0.45 +0.7
410,318 - OKGIIK_01770 0.45 -1.5
410,487 + OKGIIK_01770 0.64 -1.0
410,487 + OKGIIK_01770 0.64 -2.1
410,488 - OKGIIK_01770 0.64 +0.1
410,699 + OKGIIK_01770 0.87 +0.4
410,699 + OKGIIK_01770 0.87 +1.3
410,699 + OKGIIK_01770 0.87 -0.1
410,700 - OKGIIK_01770 0.87 -0.7
410,700 - OKGIIK_01770 0.87 +1.9
410,932 + -1.1
410,951 + -1.4
410,951 + -0.5
410,952 - +0.4
410,962 - +0.9
410,962 - +0.4
411,024 + -1.1
411,024 + -0.3
411,024 + +0.9
411,024 + -0.3
411,024 + -0.6
411,024 + +0.5
411,024 + +0.0
411,024 + +0.7
411,025 - -0.2
411,025 - +0.9
411,034 + -0.7
411,034 + +1.8
411,034 + -3.1
411,035 - -0.2
411,076 - -0.9
411,242 - OKGIIK_01775 0.36 +1.2
411,242 - OKGIIK_01775 0.36 +0.6
411,242 - OKGIIK_01775 0.36 +1.2
411,269 - OKGIIK_01775 0.40 +0.2
411,269 - OKGIIK_01775 0.40 +0.8
411,397 + OKGIIK_01775 0.61 -1.0
411,397 + OKGIIK_01775 0.61 +0.8
411,397 + OKGIIK_01775 0.61 +0.6
411,397 + OKGIIK_01775 0.61 +0.5
411,397 + OKGIIK_01775 0.61 +0.6
411,397 + OKGIIK_01775 0.61 -1.9
411,397 + OKGIIK_01775 0.61 -0.1
411,398 - OKGIIK_01775 0.61 +1.6
411,398 - OKGIIK_01775 0.61 -1.2
411,398 - OKGIIK_01775 0.61 +0.9
411,398 - OKGIIK_01775 0.61 -0.7
411,439 + OKGIIK_01775 0.68 +0.4
411,439 + OKGIIK_01775 0.68 -1.6
411,514 + OKGIIK_01775 0.80 -0.3
411,514 + OKGIIK_01775 0.80 -1.1
411,514 + OKGIIK_01775 0.80 +0.0
411,515 - OKGIIK_01775 0.80 -1.0
411,515 - OKGIIK_01775 0.80 -1.4
411,515 - OKGIIK_01775 0.80 -0.7
411,669 + +0.6
411,669 + -0.4
411,669 + -1.5
411,669 + -0.3
411,669 + -0.3
411,669 + -1.2
411,669 + -0.4
411,678 - +0.0

Or see this region's nucleotide sequence