Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5175 and GFF5176 are separated by 1 nucleotides GFF5176 and GFF5177 are separated by 167 nucleotides
GFF5175 - 7-cyano-7-deazaguanine synthase, at 56,278 to 56,970
GFF5175
GFF5176 - 7-carboxy-7-deazaguanine synthase, at 56,972 to 57,619
GFF5176
GFF5177 - Cell division coordinator CpoB, at 57,787 to 58,626
GFF5177
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.993 kb on + strand at 56.139 kb on - strand at 56.139 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.286 kb on - strand at 56.385 kb on - strand, within GFF5175 at 56.385 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.573 kb on + strand, within GFF5175 at 56.574 kb on - strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.673 kb on - strand, within GFF5175 at 56.861 kb on + strand, within GFF5175 at 56.949 kb on + strand at 57.000 kb on + strand at 57.000 kb on + strand at 57.000 kb on + strand at 57.001 kb on - strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.026 kb on + strand at 57.101 kb on + strand, within GFF5176 at 57.101 kb on + strand, within GFF5176 at 57.102 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.226 kb on - strand, within GFF5176 at 57.302 kb on + strand, within GFF5176 at 57.302 kb on + strand, within GFF5176 at 57.309 kb on - strand, within GFF5176 at 57.489 kb on + strand, within GFF5176 at 57.504 kb on + strand, within GFF5176 at 57.619 kb on + strand at 57.620 kb on - strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.642 kb on - strand at 57.642 kb on - strand at 57.693 kb on - strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.800 kb on - strand at 57.902 kb on - strand, within GFF5177 at 57.917 kb on + strand, within GFF5177 at 57.918 kb on - strand, within GFF5177 at 57.918 kb on - strand, within GFF5177 at 57.951 kb on - strand, within GFF5177 at 58.029 kb on - strand, within GFF5177 at 58.029 kb on - strand, within GFF5177 at 58.062 kb on - strand, within GFF5177 at 58.062 kb on - strand, within GFF5177 at 58.062 kb on - strand, within GFF5177 at 58.139 kb on + strand, within GFF5177 at 58.139 kb on + strand, within GFF5177 at 58.139 kb on + strand, within GFF5177 at 58.139 kb on + strand, within GFF5177 at 58.140 kb on - strand, within GFF5177 at 58.140 kb on - strand, within GFF5177 at 58.140 kb on - strand, within GFF5177 at 58.140 kb on - strand, within GFF5177 at 58.140 kb on - strand, within GFF5177 at 58.143 kb on - strand, within GFF5177 at 58.300 kb on + strand, within GFF5177 at 58.300 kb on + strand, within GFF5177 at 58.301 kb on - strand, within GFF5177 at 58.301 kb on - strand, within GFF5177 at 58.301 kb on - strand, within GFF5177 at 58.322 kb on + strand, within GFF5177 at 58.475 kb on + strand, within GFF5177 at 58.476 kb on - strand, within GFF5177 at 58.476 kb on - strand, within GFF5177 at 58.509 kb on - strand, within GFF5177 at 58.527 kb on + strand, within GFF5177 at 58.527 kb on + strand, within GFF5177 at 58.527 kb on + strand, within GFF5177 at 58.527 kb on + strand, within GFF5177 at 58.527 kb on + strand, within GFF5177 at 58.528 kb on - strand, within GFF5177 at 58.528 kb on - strand, within GFF5177 at 58.528 kb on - strand, within GFF5177 at 58.529 kb on + strand, within GFF5177 at 58.604 kb on - strand at 58.604 kb on - strand at 58.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 55,993 + -0.2 56,139 - +0.8 56,139 - -0.1 56,166 - -0.6 56,166 - +1.8 56,166 - +1.3 56,286 - +0.3 56,385 - GFF5175 0.15 -0.8 56,385 - GFF5175 0.15 +1.2 56,406 - GFF5175 0.18 -0.7 56,406 - GFF5175 0.18 +0.3 56,573 + GFF5175 0.43 +1.0 56,574 - GFF5175 0.43 -0.4 56,672 + GFF5175 0.57 -1.2 56,672 + GFF5175 0.57 -0.1 56,672 + GFF5175 0.57 +0.4 56,673 - GFF5175 0.57 -1.2 56,861 + GFF5175 0.84 +0.8 56,949 + -0.3 57,000 + +1.6 57,000 + +0.3 57,000 + -0.6 57,001 - +0.3 57,004 + -0.2 57,004 + -0.4 57,004 + -0.5 57,004 + -0.4 57,004 + -0.9 57,004 + -0.4 57,004 + -0.9 57,005 - -1.1 57,005 - +0.6 57,005 - +0.1 57,005 - +0.7 57,026 + -0.3 57,101 + GFF5176 0.20 +0.4 57,101 + GFF5176 0.20 +0.6 57,102 - GFF5176 0.20 -1.3 57,130 - GFF5176 0.24 -0.9 57,130 - GFF5176 0.24 +0.2 57,130 - GFF5176 0.24 +0.4 57,226 - GFF5176 0.39 -0.7 57,302 + GFF5176 0.51 +0.2 57,302 + GFF5176 0.51 +1.0 57,309 - GFF5176 0.52 +0.8 57,489 + GFF5176 0.80 +0.4 57,504 + GFF5176 0.82 -0.1 57,619 + -0.7 57,620 - +0.7 57,641 + +0.8 57,641 + +1.0 57,641 + -0.7 57,642 - -0.1 57,642 - +1.0 57,693 - -0.4 57,788 + -0.6 57,788 + -0.6 57,788 + -0.2 57,788 + -0.1 57,788 + +0.3 57,789 - -0.5 57,789 - +1.2 57,789 - -1.8 57,789 - -0.7 57,789 - +0.9 57,800 - +0.3 57,902 - GFF5177 0.14 -1.4 57,917 + GFF5177 0.15 +0.1 57,918 - GFF5177 0.16 +0.6 57,918 - GFF5177 0.16 +0.5 57,951 - GFF5177 0.20 +0.9 58,029 - GFF5177 0.29 +0.9 58,029 - GFF5177 0.29 +0.6 58,062 - GFF5177 0.33 -1.0 58,062 - GFF5177 0.33 +0.1 58,062 - GFF5177 0.33 +0.7 58,139 + GFF5177 0.42 +1.7 58,139 + GFF5177 0.42 +0.3 58,139 + GFF5177 0.42 -1.4 58,139 + GFF5177 0.42 -0.4 58,140 - GFF5177 0.42 +0.2 58,140 - GFF5177 0.42 -0.1 58,140 - GFF5177 0.42 -0.2 58,140 - GFF5177 0.42 +0.1 58,140 - GFF5177 0.42 -1.6 58,143 - GFF5177 0.42 -1.5 58,300 + GFF5177 0.61 -1.4 58,300 + GFF5177 0.61 -2.1 58,301 - GFF5177 0.61 -0.9 58,301 - GFF5177 0.61 -1.4 58,301 - GFF5177 0.61 -0.2 58,322 + GFF5177 0.64 -0.9 58,475 + GFF5177 0.82 -1.8 58,476 - GFF5177 0.82 -0.9 58,476 - GFF5177 0.82 -2.5 58,509 - GFF5177 0.86 -1.7 58,527 + GFF5177 0.88 -1.2 58,527 + GFF5177 0.88 -1.2 58,527 + GFF5177 0.88 -1.2 58,527 + GFF5177 0.88 -2.0 58,527 + GFF5177 0.88 -2.0 58,528 - GFF5177 0.88 -1.2 58,528 - GFF5177 0.88 -1.5 58,528 - GFF5177 0.88 -1.6 58,529 + GFF5177 0.88 -1.4 58,604 - -0.4 58,604 - -1.2 58,604 - -1.0
Or see this region's nucleotide sequence