Strain Fitness in Pseudomonas sp. DMC3 around GFF4530

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4529 and GFF4530 are separated by 205 nucleotidesGFF4530 and GFF4531 are separated by 101 nucleotidesGFF4531 and GFF4532 are separated by 101 nucleotidesGFF4532 and GFF4533 are separated by 93 nucleotides GFF4529 - Cysteine desulfurase IscS, at 5,474 to 6,640 GFF4529 GFF4530 - Cysteine/O-acetylserine efflux protein, at 6,846 to 7,460 GFF4530 GFF4531 - hypothetical protein, at 7,562 to 7,831 GFF4531 GFF4532 - hypothetical protein, at 7,933 to 8,295 GFF4532 GFF4533 - Redox-sensitive transcriptional activator SoxR, at 8,389 to 8,841 GFF4533 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.988 kb on + strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 5.989 kb on - strand, within GFF4529at 6.041 kb on + strand, within GFF4529at 6.041 kb on + strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.042 kb on - strand, within GFF4529at 6.270 kb on + strand, within GFF4529at 6.270 kb on + strand, within GFF4529at 6.271 kb on - strand, within GFF4529at 6.271 kb on - strand, within GFF4529at 6.343 kb on + strand, within GFF4529at 6.343 kb on + strand, within GFF4529at 6.343 kb on + strand, within GFF4529at 6.343 kb on + strand, within GFF4529at 6.621 kb on + strandat 6.621 kb on + strandat 6.640 kb on + strandat 6.640 kb on + strandat 6.640 kb on + strandat 6.640 kb on + strandat 6.641 kb on - strandat 6.740 kb on + strandat 6.740 kb on + strandat 6.741 kb on - strandat 6.741 kb on - strandat 6.741 kb on - strandat 6.741 kb on - strandat 6.741 kb on - strandat 6.766 kb on + strandat 6.766 kb on + strandat 6.779 kb on - strandat 6.788 kb on + strandat 6.788 kb on + strandat 6.812 kb on + strandat 6.813 kb on - strandat 6.813 kb on - strandat 6.868 kb on - strandat 7.032 kb on - strand, within GFF4530at 7.033 kb on + strand, within GFF4530at 7.033 kb on + strand, within GFF4530at 7.034 kb on - strand, within GFF4530at 7.034 kb on - strand, within GFF4530at 7.034 kb on - strand, within GFF4530at 7.034 kb on - strand, within GFF4530at 7.034 kb on - strand, within GFF4530at 7.039 kb on + strand, within GFF4530at 7.040 kb on - strand, within GFF4530at 7.040 kb on - strand, within GFF4530at 7.040 kb on - strand, within GFF4530at 7.057 kb on + strand, within GFF4530at 7.058 kb on - strand, within GFF4530at 7.058 kb on - strand, within GFF4530at 7.129 kb on + strand, within GFF4530at 7.129 kb on + strand, within GFF4530at 7.129 kb on + strand, within GFF4530at 7.129 kb on + strand, within GFF4530at 7.130 kb on - strand, within GFF4530at 7.130 kb on - strand, within GFF4530at 7.130 kb on - strand, within GFF4530at 7.130 kb on - strand, within GFF4530at 7.130 kb on - strand, within GFF4530at 7.201 kb on + strand, within GFF4530at 7.202 kb on - strand, within GFF4530at 7.202 kb on - strand, within GFF4530at 7.211 kb on - strand, within GFF4530at 7.211 kb on - strand, within GFF4530at 7.211 kb on - strand, within GFF4530at 7.226 kb on - strand, within GFF4530at 7.238 kb on + strand, within GFF4530at 7.238 kb on + strand, within GFF4530at 7.240 kb on + strand, within GFF4530at 7.240 kb on + strand, within GFF4530at 7.240 kb on + strand, within GFF4530at 7.240 kb on + strand, within GFF4530at 7.241 kb on - strand, within GFF4530at 7.498 kb on + strandat 7.532 kb on - strandat 7.586 kb on + strandat 7.649 kb on + strand, within GFF4531at 7.650 kb on - strand, within GFF4531at 7.650 kb on - strand, within GFF4531at 7.674 kb on + strand, within GFF4531at 7.743 kb on + strand, within GFF4531at 7.743 kb on + strand, within GFF4531at 7.743 kb on + strand, within GFF4531at 7.744 kb on - strand, within GFF4531at 7.744 kb on - strand, within GFF4531at 7.820 kb on + strandat 7.820 kb on + strandat 7.821 kb on - strandat 7.821 kb on - strandat 7.914 kb on - strandat 7.914 kb on - strandat 7.914 kb on - strandat 7.920 kb on + strandat 7.921 kb on - strandat 7.934 kb on + strandat 7.937 kb on + strandat 8.278 kb on - strandat 8.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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5,988 + GFF4529 0.44 +0.4
5,988 + GFF4529 0.44 +0.3
5,988 + GFF4529 0.44 +0.8
5,988 + GFF4529 0.44 -0.8
5,988 + GFF4529 0.44 +1.5
5,988 + GFF4529 0.44 +0.3
5,988 + GFF4529 0.44 +1.1
5,988 + GFF4529 0.44 +0.5
5,988 + GFF4529 0.44 -0.2
5,988 + GFF4529 0.44 -0.5
5,988 + GFF4529 0.44 -0.1
5,988 + GFF4529 0.44 +0.2
5,988 + GFF4529 0.44 -1.0
5,988 + GFF4529 0.44 -0.3
5,988 + GFF4529 0.44 -0.0
5,989 - GFF4529 0.44 -0.6
5,989 - GFF4529 0.44 -0.5
5,989 - GFF4529 0.44 -0.1
5,989 - GFF4529 0.44 +0.6
5,989 - GFF4529 0.44 -0.1
5,989 - GFF4529 0.44 -0.8
5,989 - GFF4529 0.44 +0.1
5,989 - GFF4529 0.44 -1.1
5,989 - GFF4529 0.44 +0.6
6,041 + GFF4529 0.49 +0.9
6,041 + GFF4529 0.49 +1.2
6,042 - GFF4529 0.49 +0.0
6,042 - GFF4529 0.49 +0.2
6,042 - GFF4529 0.49 +0.1
6,042 - GFF4529 0.49 -0.1
6,042 - GFF4529 0.49 +0.0
6,042 - GFF4529 0.49 -0.6
6,042 - GFF4529 0.49 -0.5
6,042 - GFF4529 0.49 -0.8
6,042 - GFF4529 0.49 +1.2
6,042 - GFF4529 0.49 +0.3
6,042 - GFF4529 0.49 -0.3
6,270 + GFF4529 0.68 -0.2
6,270 + GFF4529 0.68 +0.9
6,271 - GFF4529 0.68 -0.8
6,271 - GFF4529 0.68 -0.1
6,343 + GFF4529 0.74 +0.1
6,343 + GFF4529 0.74 +0.3
6,343 + GFF4529 0.74 -0.7
6,343 + GFF4529 0.74 -0.7
6,621 + +0.5
6,621 + -0.3
6,640 + +0.8
6,640 + -1.2
6,640 + -0.2
6,640 + +0.8
6,641 - +0.2
6,740 + +0.5
6,740 + -0.3
6,741 - -0.7
6,741 - -1.0
6,741 - -0.4
6,741 - +0.3
6,741 - +1.5
6,766 + -0.7
6,766 + -1.2
6,779 - -0.2
6,788 + -0.0
6,788 + -1.0
6,812 + -0.1
6,813 - -1.6
6,813 - +1.1
6,868 - +0.1
7,032 - GFF4530 0.30 -0.1
7,033 + GFF4530 0.30 +0.9
7,033 + GFF4530 0.30 -0.4
7,034 - GFF4530 0.31 +0.5
7,034 - GFF4530 0.31 +0.7
7,034 - GFF4530 0.31 -1.1
7,034 - GFF4530 0.31 -0.4
7,034 - GFF4530 0.31 -0.2
7,039 + GFF4530 0.31 +0.5
7,040 - GFF4530 0.32 +0.4
7,040 - GFF4530 0.32 +0.1
7,040 - GFF4530 0.32 +0.7
7,057 + GFF4530 0.34 -0.2
7,058 - GFF4530 0.34 -0.1
7,058 - GFF4530 0.34 +0.4
7,129 + GFF4530 0.46 +0.5
7,129 + GFF4530 0.46 -0.5
7,129 + GFF4530 0.46 -0.2
7,129 + GFF4530 0.46 -0.1
7,130 - GFF4530 0.46 -1.2
7,130 - GFF4530 0.46 -0.1
7,130 - GFF4530 0.46 -0.2
7,130 - GFF4530 0.46 -0.5
7,130 - GFF4530 0.46 -1.0
7,201 + GFF4530 0.58 +0.3
7,202 - GFF4530 0.58 -2.0
7,202 - GFF4530 0.58 -0.3
7,211 - GFF4530 0.59 -0.8
7,211 - GFF4530 0.59 -0.8
7,211 - GFF4530 0.59 +1.2
7,226 - GFF4530 0.62 -1.1
7,238 + GFF4530 0.64 +1.0
7,238 + GFF4530 0.64 +0.8
7,240 + GFF4530 0.64 -0.3
7,240 + GFF4530 0.64 +1.2
7,240 + GFF4530 0.64 +0.4
7,240 + GFF4530 0.64 -0.1
7,241 - GFF4530 0.64 +0.5
7,498 + -1.3
7,532 - +0.5
7,586 + -0.3
7,649 + GFF4531 0.32 +0.1
7,650 - GFF4531 0.33 -0.5
7,650 - GFF4531 0.33 -0.7
7,674 + GFF4531 0.41 +0.9
7,743 + GFF4531 0.67 +0.3
7,743 + GFF4531 0.67 -0.5
7,743 + GFF4531 0.67 +0.9
7,744 - GFF4531 0.67 +0.6
7,744 - GFF4531 0.67 -0.9
7,820 + -0.2
7,820 + +0.1
7,821 - -0.2
7,821 - -1.8
7,914 - -0.3
7,914 - -1.3
7,914 - -2.1
7,920 + -0.8
7,921 - +1.1
7,934 + -0.2
7,937 + -0.5
8,278 - -0.4
8,379 + -0.5

Or see this region's nucleotide sequence