Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3317 and GFF3318 are separated by 51 nucleotides GFF3318 and GFF3319 are separated by 414 nucleotides
GFF3317 - Methyl-accepting chemotaxis protein CtpL, at 319,658 to 321,604
GFF3317
GFF3318 - Regulator of RpoS, at 321,656 to 323,326
GFF3318
GFF3319 - hypothetical protein, at 323,741 to 324,808
GFF3319
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 320.754 kb on - strand, within GFF3317 at 320.936 kb on - strand, within GFF3317 at 320.936 kb on - strand, within GFF3317 at 321.165 kb on + strand, within GFF3317 at 321.165 kb on + strand, within GFF3317 at 321.166 kb on - strand, within GFF3317 at 321.186 kb on + strand, within GFF3317 at 321.426 kb on + strand at 321.427 kb on - strand at 321.480 kb on + strand at 321.480 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.498 kb on + strand at 321.499 kb on - strand at 321.499 kb on - strand at 321.629 kb on + strand at 321.630 kb on - strand at 321.630 kb on - strand at 321.657 kb on + strand at 321.657 kb on + strand at 321.657 kb on + strand at 321.665 kb on + strand at 321.665 kb on + strand at 321.911 kb on - strand, within GFF3318 at 321.967 kb on - strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.173 kb on + strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.174 kb on - strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.347 kb on + strand, within GFF3318 at 322.348 kb on - strand, within GFF3318 at 322.348 kb on - strand, within GFF3318 at 322.369 kb on - strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.425 kb on + strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.426 kb on - strand, within GFF3318 at 322.579 kb on + strand, within GFF3318 at 322.580 kb on - strand, within GFF3318 at 322.581 kb on + strand, within GFF3318 at 322.581 kb on + strand, within GFF3318 at 322.582 kb on - strand, within GFF3318 at 322.582 kb on - strand, within GFF3318 at 322.950 kb on + strand, within GFF3318 at 322.950 kb on + strand, within GFF3318 at 322.951 kb on - strand, within GFF3318 at 322.951 kb on - strand, within GFF3318 at 323.238 kb on - strand at 323.238 kb on - strand at 323.238 kb on - strand at 323.268 kb on - strand at 323.268 kb on - strand at 323.268 kb on - strand at 323.268 kb on - strand at 323.327 kb on - strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.338 kb on + strand at 323.339 kb on - strand at 323.339 kb on - strand at 323.339 kb on - strand at 323.339 kb on - strand at 323.339 kb on - strand at 323.339 kb on - strand at 323.342 kb on + strand at 323.342 kb on + strand at 323.342 kb on + strand at 323.342 kb on + strand at 323.342 kb on + strand at 323.342 kb on + strand at 323.373 kb on + strand at 323.379 kb on - strand at 323.396 kb on - strand at 323.408 kb on + strand at 323.409 kb on - strand at 323.417 kb on - strand at 323.611 kb on + strand at 323.612 kb on - strand at 323.612 kb on - strand at 323.653 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.692 kb on + strand at 323.693 kb on - strand at 323.693 kb on - strand at 323.693 kb on - strand at 323.693 kb on - strand at 323.694 kb on - strand at 323.813 kb on + strand at 323.814 kb on - strand at 323.814 kb on - strand at 323.814 kb on - strand at 323.814 kb on - strand at 323.814 kb on - strand at 323.865 kb on - strand, within GFF3319 at 323.894 kb on + strand, within GFF3319 at 323.895 kb on - strand, within GFF3319 at 323.981 kb on + strand, within GFF3319 at 323.981 kb on + strand, within GFF3319 at 324.041 kb on + strand, within GFF3319 at 324.041 kb on + strand, within GFF3319 at 324.041 kb on + strand, within GFF3319 at 324.101 kb on + strand, within GFF3319 at 324.101 kb on + strand, within GFF3319 at 324.102 kb on - strand, within GFF3319 at 324.261 kb on - strand, within GFF3319
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 320,754 - GFF3317 0.56 +0.8 320,936 - GFF3317 0.66 -0.8 320,936 - GFF3317 0.66 -1.3 321,165 + GFF3317 0.77 +0.3 321,165 + GFF3317 0.77 +1.1 321,166 - GFF3317 0.77 +0.4 321,186 + GFF3317 0.78 -0.7 321,426 + +0.1 321,427 - -0.6 321,480 + -0.2 321,480 + -0.4 321,498 + +0.2 321,498 + -0.4 321,498 + -0.8 321,498 + -0.4 321,498 + -1.0 321,499 - +0.4 321,499 - -0.8 321,629 + -0.8 321,630 - +0.3 321,630 - +0.6 321,657 + -0.5 321,657 + -0.7 321,657 + -0.4 321,665 + -0.4 321,665 + -0.7 321,911 - GFF3318 0.15 +0.6 321,967 - GFF3318 0.19 -0.4 322,173 + GFF3318 0.31 +0.2 322,173 + GFF3318 0.31 -2.0 322,173 + GFF3318 0.31 -0.1 322,174 - GFF3318 0.31 +0.4 322,174 - GFF3318 0.31 +0.4 322,174 - GFF3318 0.31 +0.3 322,174 - GFF3318 0.31 +1.2 322,174 - GFF3318 0.31 -1.2 322,347 + GFF3318 0.41 +0.6 322,347 + GFF3318 0.41 +0.2 322,347 + GFF3318 0.41 +0.4 322,348 - GFF3318 0.41 +0.8 322,348 - GFF3318 0.41 -0.1 322,369 - GFF3318 0.43 +1.1 322,425 + GFF3318 0.46 -0.5 322,425 + GFF3318 0.46 +1.2 322,425 + GFF3318 0.46 +0.8 322,425 + GFF3318 0.46 -0.5 322,425 + GFF3318 0.46 -0.4 322,425 + GFF3318 0.46 -0.5 322,425 + GFF3318 0.46 +0.1 322,425 + GFF3318 0.46 -0.5 322,425 + GFF3318 0.46 -1.2 322,425 + GFF3318 0.46 +0.2 322,425 + GFF3318 0.46 +2.1 322,425 + GFF3318 0.46 +1.2 322,425 + GFF3318 0.46 +0.0 322,425 + GFF3318 0.46 -0.2 322,425 + GFF3318 0.46 +1.3 322,425 + GFF3318 0.46 +0.3 322,425 + GFF3318 0.46 +1.8 322,425 + GFF3318 0.46 +1.2 322,426 - GFF3318 0.46 -0.5 322,426 - GFF3318 0.46 -0.3 322,426 - GFF3318 0.46 +0.2 322,426 - GFF3318 0.46 +1.0 322,426 - GFF3318 0.46 +0.5 322,426 - GFF3318 0.46 -0.6 322,426 - GFF3318 0.46 +0.6 322,426 - GFF3318 0.46 -1.4 322,426 - GFF3318 0.46 -0.5 322,426 - GFF3318 0.46 +1.1 322,426 - GFF3318 0.46 +1.1 322,579 + GFF3318 0.55 +0.6 322,580 - GFF3318 0.55 -0.2 322,581 + GFF3318 0.55 -0.0 322,581 + GFF3318 0.55 -0.5 322,582 - GFF3318 0.55 -0.3 322,582 - GFF3318 0.55 +0.2 322,950 + GFF3318 0.77 +0.6 322,950 + GFF3318 0.77 -0.2 322,951 - GFF3318 0.77 -0.2 322,951 - GFF3318 0.77 -0.9 323,238 - +0.5 323,238 - +0.4 323,238 - -1.3 323,268 - +0.6 323,268 - +0.3 323,268 - +0.7 323,268 - -1.7 323,327 - +0.2 323,338 + +0.1 323,338 + -0.5 323,338 + -0.6 323,338 + +1.6 323,338 + -0.2 323,338 + -0.3 323,338 + -0.0 323,339 - -0.3 323,339 - +0.4 323,339 - +0.1 323,339 - +0.5 323,339 - +0.6 323,339 - +1.6 323,342 + -1.6 323,342 + +0.9 323,342 + -0.2 323,342 + -0.1 323,342 + -1.6 323,342 + -0.2 323,373 + -0.2 323,379 - -0.6 323,396 - +0.2 323,408 + +1.0 323,409 - -0.9 323,417 - +0.2 323,611 + -0.7 323,612 - -1.0 323,612 - -0.3 323,653 + -0.2 323,692 + -0.5 323,692 + -0.2 323,692 + -0.1 323,692 + -0.2 323,692 + -0.0 323,692 + -0.7 323,692 + +0.2 323,692 + +0.2 323,693 - -0.0 323,693 - +0.4 323,693 - -1.3 323,693 - +1.1 323,694 - -0.0 323,813 + +0.4 323,814 - -0.2 323,814 - -1.7 323,814 - -0.7 323,814 - +0.2 323,814 - +1.3 323,865 - GFF3319 0.12 -0.2 323,894 + GFF3319 0.14 +0.3 323,895 - GFF3319 0.14 +0.9 323,981 + GFF3319 0.22 +1.6 323,981 + GFF3319 0.22 -0.5 324,041 + GFF3319 0.28 -1.1 324,041 + GFF3319 0.28 +0.6 324,041 + GFF3319 0.28 -0.2 324,101 + GFF3319 0.34 +0.8 324,101 + GFF3319 0.34 +0.1 324,102 - GFF3319 0.34 -0.3 324,261 - GFF3319 0.49 -1.2
Or see this region's nucleotide sequence