Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2924 and GFF2925 are separated by 152 nucleotides GFF2925 and GFF2926 overlap by 8 nucleotides GFF2926 and GFF2927 are separated by 57 nucleotides
GFF2924 - HTH-type transcriptional regulator KdgR, at 296,383 to 297,411
GFF2924
GFF2925 - hypothetical protein, at 297,564 to 298,346
GFF2925
GFF2926 - 2-dehydro-3-deoxygluconokinase, at 298,339 to 299,346
GFF2926
GFF2927 - Putative tartrate transporter, at 299,404 to 300,702
GFF2927
Position (kb) 298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 297.512 kb on - strand at 297.512 kb on - strand at 297.512 kb on - strand at 297.560 kb on - strand at 297.569 kb on + strand at 297.569 kb on + strand at 297.600 kb on + strand at 297.600 kb on + strand at 297.600 kb on + strand at 297.600 kb on + strand at 297.601 kb on - strand at 297.759 kb on + strand, within GFF2925 at 297.759 kb on + strand, within GFF2925 at 297.759 kb on + strand, within GFF2925 at 297.760 kb on - strand, within GFF2925 at 297.876 kb on + strand, within GFF2925 at 297.877 kb on - strand, within GFF2925 at 297.947 kb on - strand, within GFF2925 at 298.116 kb on + strand, within GFF2925 at 298.353 kb on + strand at 298.657 kb on + strand, within GFF2926 at 298.657 kb on + strand, within GFF2926 at 298.987 kb on + strand, within GFF2926 at 299.041 kb on + strand, within GFF2926 at 299.440 kb on + strand at 299.440 kb on + strand at 299.440 kb on + strand at 299.440 kb on + strand at 299.440 kb on + strand at 299.440 kb on + strand at 299.440 kb on + strand at 299.441 kb on - strand at 299.441 kb on - strand at 299.441 kb on - strand at 299.441 kb on - strand at 299.441 kb on - strand at 299.467 kb on + strand at 299.467 kb on + strand at 299.467 kb on + strand at 299.468 kb on - strand at 299.468 kb on - strand at 299.468 kb on - strand at 299.480 kb on - strand at 299.497 kb on + strand at 299.498 kb on - strand at 299.498 kb on - strand at 299.617 kb on + strand, within GFF2927 at 299.618 kb on - strand, within GFF2927 at 299.779 kb on + strand, within GFF2927 at 299.779 kb on + strand, within GFF2927 at 299.780 kb on - strand, within GFF2927 at 299.780 kb on - strand, within GFF2927 at 299.780 kb on - strand, within GFF2927 at 299.780 kb on - strand, within GFF2927 at 299.780 kb on - strand, within GFF2927 at 299.882 kb on - strand, within GFF2927 at 299.952 kb on + strand, within GFF2927 at 300.145 kb on + strand, within GFF2927
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 297,512 - +0.7 297,512 - +0.2 297,512 - -1.7 297,560 - -0.1 297,569 + -0.6 297,569 + +1.2 297,600 + -2.0 297,600 + -1.2 297,600 + -0.3 297,600 + -1.3 297,601 - +0.9 297,759 + GFF2925 0.25 +0.5 297,759 + GFF2925 0.25 +0.2 297,759 + GFF2925 0.25 +0.5 297,760 - GFF2925 0.25 +0.1 297,876 + GFF2925 0.40 -1.1 297,877 - GFF2925 0.40 -0.5 297,947 - GFF2925 0.49 -1.1 298,116 + GFF2925 0.70 -0.3 298,353 + -0.9 298,657 + GFF2926 0.32 -0.5 298,657 + GFF2926 0.32 +0.9 298,987 + GFF2926 0.64 -0.3 299,041 + GFF2926 0.70 +0.4 299,440 + -0.6 299,440 + +0.0 299,440 + -0.3 299,440 + +0.2 299,440 + +0.9 299,440 + -0.1 299,440 + +1.7 299,441 - -1.8 299,441 - -1.2 299,441 - -1.2 299,441 - -1.8 299,441 - -0.5 299,467 + +0.7 299,467 + -1.4 299,467 + +0.5 299,468 - -0.2 299,468 - +0.4 299,468 - +0.5 299,480 - -0.5 299,497 + +0.2 299,498 - -0.4 299,498 - +0.5 299,617 + GFF2927 0.16 -0.8 299,618 - GFF2927 0.16 +0.0 299,779 + GFF2927 0.29 -0.0 299,779 + GFF2927 0.29 -0.1 299,780 - GFF2927 0.29 -0.1 299,780 - GFF2927 0.29 -0.6 299,780 - GFF2927 0.29 +0.3 299,780 - GFF2927 0.29 +0.2 299,780 - GFF2927 0.29 +0.0 299,882 - GFF2927 0.37 +0.5 299,952 + GFF2927 0.42 -2.0 300,145 + GFF2927 0.57 +0.2
Or see this region's nucleotide sequence