Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2021 and GFF2022 are separated by 367 nucleotides GFF2022 and GFF2023 are separated by 213 nucleotides GFF2023 and GFF2024 are separated by 300 nucleotides
GFF2021 - hypothetical protein, at 261,323 to 261,727
GFF2021
GFF2022 - hypothetical protein, at 262,095 to 262,439
GFF2022
GFF2023 - Phosphoenolpyruvate carboxylase, at 262,653 to 265,283
GFF2023
GFF2024 - Adenylate kinase, at 265,584 to 266,234
GFF2024
Position (kb) 262
263
264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 261.728 kb on + strand at 261.729 kb on - strand at 261.729 kb on - strand at 261.745 kb on + strand at 261.745 kb on + strand at 261.746 kb on - strand at 261.789 kb on + strand at 261.789 kb on + strand at 261.789 kb on + strand at 261.824 kb on + strand at 261.824 kb on + strand at 261.824 kb on + strand at 261.825 kb on - strand at 261.872 kb on + strand at 261.957 kb on + strand at 261.965 kb on + strand at 261.965 kb on + strand at 261.966 kb on - strand at 261.983 kb on - strand at 261.983 kb on - strand at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.237 kb on + strand, within GFF2022 at 262.238 kb on - strand, within GFF2022 at 262.238 kb on - strand, within GFF2022 at 262.315 kb on + strand, within GFF2022 at 262.316 kb on - strand, within GFF2022 at 262.373 kb on - strand, within GFF2022 at 262.453 kb on - strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.531 kb on - strand at 262.531 kb on - strand at 262.531 kb on - strand at 262.550 kb on + strand at 262.551 kb on - strand at 262.574 kb on + strand at 262.574 kb on + strand at 262.574 kb on + strand at 262.575 kb on - strand at 262.661 kb on + strand at 262.908 kb on + strand at 262.908 kb on + strand at 262.909 kb on - strand at 262.909 kb on - strand at 263.103 kb on + strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.312 kb on + strand, within GFF2023 at 263.313 kb on - strand, within GFF2023 at 263.313 kb on - strand, within GFF2023 at 263.487 kb on + strand, within GFF2023 at 263.687 kb on + strand, within GFF2023 at 263.878 kb on - strand, within GFF2023 at 264.057 kb on + strand, within GFF2023 at 264.057 kb on + strand, within GFF2023 at 264.058 kb on - strand, within GFF2023 at 264.058 kb on - strand, within GFF2023 at 264.058 kb on - strand, within GFF2023 at 264.058 kb on - strand, within GFF2023 at 264.543 kb on + strand, within GFF2023 at 264.684 kb on + strand, within GFF2023 at 264.685 kb on - strand, within GFF2023 at 264.685 kb on - strand, within GFF2023 at 264.685 kb on - strand, within GFF2023 at 264.685 kb on - strand, within GFF2023 at 264.685 kb on - strand, within GFF2023 at 264.984 kb on + strand, within GFF2023 at 264.984 kb on + strand, within GFF2023 at 264.984 kb on + strand, within GFF2023 at 264.985 kb on - strand, within GFF2023 at 264.985 kb on - strand, within GFF2023 at 265.042 kb on + strand at 265.043 kb on - strand at 265.043 kb on - strand at 265.043 kb on - strand at 265.043 kb on - strand at 265.143 kb on + strand at 265.144 kb on - strand at 265.144 kb on - strand at 265.144 kb on - strand at 265.144 kb on - strand at 265.162 kb on + strand at 265.162 kb on + strand at 265.162 kb on + strand at 265.163 kb on - strand at 265.163 kb on - strand at 265.163 kb on - strand at 265.163 kb on - strand at 265.163 kb on - strand at 265.282 kb on - strand at 265.343 kb on + strand at 265.344 kb on - strand at 265.368 kb on + strand at 265.369 kb on - strand at 265.369 kb on - strand at 265.369 kb on - strand at 265.369 kb on - strand at 265.369 kb on - strand at 265.466 kb on + strand at 265.466 kb on + strand at 265.466 kb on + strand at 265.466 kb on + strand at 265.558 kb on + strand at 266.278 kb on + strand at 266.278 kb on + strand at 266.278 kb on + strand at 266.279 kb on - strand at 266.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 261,728 + -0.2 261,729 - +0.6 261,729 - -0.3 261,745 + -1.4 261,745 + +0.4 261,746 - +0.1 261,789 + -0.6 261,789 + -0.9 261,789 + +1.6 261,824 + -0.7 261,824 + +1.7 261,824 + -1.0 261,825 - -2.5 261,872 + -0.4 261,957 + -0.2 261,965 + +1.1 261,965 + -0.8 261,966 - +0.3 261,983 - +0.7 261,983 - +0.0 262,186 + GFF2022 0.26 -0.5 262,186 + GFF2022 0.26 +1.6 262,186 + GFF2022 0.26 +1.1 262,186 + GFF2022 0.26 -0.4 262,186 + GFF2022 0.26 -0.6 262,186 + GFF2022 0.26 +0.3 262,186 + GFF2022 0.26 +1.2 262,187 - GFF2022 0.27 -0.1 262,187 - GFF2022 0.27 +0.9 262,187 - GFF2022 0.27 -0.0 262,237 + GFF2022 0.41 -0.8 262,238 - GFF2022 0.41 -0.3 262,238 - GFF2022 0.41 -0.0 262,315 + GFF2022 0.64 -1.7 262,316 - GFF2022 0.64 -0.3 262,373 - GFF2022 0.81 +0.3 262,453 - -0.1 262,518 + +0.1 262,518 + +0.4 262,518 + -0.3 262,518 + -0.8 262,530 + -0.1 262,530 + +0.3 262,530 + -1.5 262,530 + -0.9 262,531 - +0.8 262,531 - -0.1 262,531 - +0.9 262,550 + +0.0 262,551 - +0.6 262,574 + -0.7 262,574 + -0.1 262,574 + -0.3 262,575 - +0.4 262,661 + +0.1 262,908 + +0.3 262,908 + +0.5 262,909 - +0.4 262,909 - -0.1 263,103 + GFF2023 0.17 -2.0 263,104 - GFF2023 0.17 -0.8 263,104 - GFF2023 0.17 -0.8 263,104 - GFF2023 0.17 -0.9 263,104 - GFF2023 0.17 -0.9 263,312 + GFF2023 0.25 -0.3 263,313 - GFF2023 0.25 +1.7 263,313 - GFF2023 0.25 -0.8 263,487 + GFF2023 0.32 +0.3 263,687 + GFF2023 0.39 +0.6 263,878 - GFF2023 0.47 +0.4 264,057 + GFF2023 0.53 +0.5 264,057 + GFF2023 0.53 +0.3 264,058 - GFF2023 0.53 +0.4 264,058 - GFF2023 0.53 +0.9 264,058 - GFF2023 0.53 -0.1 264,058 - GFF2023 0.53 +0.4 264,543 + GFF2023 0.72 -1.1 264,684 + GFF2023 0.77 -0.4 264,685 - GFF2023 0.77 -0.3 264,685 - GFF2023 0.77 -0.4 264,685 - GFF2023 0.77 +0.1 264,685 - GFF2023 0.77 -0.1 264,685 - GFF2023 0.77 +1.0 264,984 + GFF2023 0.89 +0.7 264,984 + GFF2023 0.89 +0.6 264,984 + GFF2023 0.89 -0.4 264,985 - GFF2023 0.89 -0.1 264,985 - GFF2023 0.89 +0.6 265,042 + +0.8 265,043 - -0.5 265,043 - -0.4 265,043 - -0.6 265,043 - -0.5 265,143 + -0.2 265,144 - -1.0 265,144 - -0.4 265,144 - +1.1 265,144 - +0.3 265,162 + +1.8 265,162 + +0.2 265,162 + +0.4 265,163 - -0.3 265,163 - -0.3 265,163 - +0.1 265,163 - +0.3 265,163 - -0.5 265,282 - -1.3 265,343 + +0.0 265,344 - +0.4 265,368 + +0.6 265,369 - -0.9 265,369 - -1.1 265,369 - -0.6 265,369 - -0.4 265,369 - -0.6 265,466 + -0.4 265,466 + +0.2 265,466 + +0.7 265,466 + +0.9 265,558 + -0.5 266,278 + +0.9 266,278 + -0.9 266,278 + -1.8 266,279 - +0.2 266,279 - -2.5
Or see this region's nucleotide sequence