Strain Fitness in Pseudomonas sp. DMC3 around GFF2007

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2006 and GFF2007 are separated by 438 nucleotidesGFF2007 and GFF2008 overlap by 1 nucleotidesGFF2008 and GFF2009 overlap by 4 nucleotides GFF2006 - Major exported protein, at 244,195 to 244,710 GFF2006 GFF2007 - hypothetical protein, at 245,149 to 246,771 GFF2007 GFF2008 - hypothetical protein, at 246,771 to 247,307 GFF2008 GFF2009 - putative biofilm formation methyltransferase WspC, at 247,304 to 248,578 GFF2009 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1 2at 244.192 kb on + strandat 244.192 kb on + strandat 244.196 kb on + strandat 244.233 kb on + strandat 244.240 kb on + strandat 244.379 kb on + strand, within GFF2006at 244.379 kb on + strand, within GFF2006at 244.379 kb on + strand, within GFF2006at 244.379 kb on + strand, within GFF2006at 244.379 kb on + strand, within GFF2006at 244.379 kb on + strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.380 kb on - strand, within GFF2006at 244.383 kb on - strand, within GFF2006at 244.383 kb on - strand, within GFF2006at 244.383 kb on - strand, within GFF2006at 244.383 kb on - strand, within GFF2006at 244.490 kb on + strand, within GFF2006at 244.491 kb on - strand, within GFF2006at 244.491 kb on - strand, within GFF2006at 244.619 kb on + strand, within GFF2006at 244.619 kb on + strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.620 kb on - strand, within GFF2006at 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.694 kb on + strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.695 kb on - strandat 244.731 kb on - strandat 244.731 kb on - strandat 244.736 kb on + strandat 244.833 kb on + strandat 244.962 kb on + strandat 244.963 kb on - strandat 244.963 kb on - strandat 245.087 kb on + strandat 245.087 kb on + strandat 245.087 kb on + strandat 245.088 kb on - strandat 245.088 kb on - strandat 245.089 kb on + strandat 245.090 kb on - strandat 245.111 kb on + strandat 245.111 kb on + strandat 245.113 kb on + strandat 245.113 kb on + strandat 245.114 kb on - strandat 245.114 kb on - strandat 245.114 kb on - strandat 245.299 kb on + strandat 245.300 kb on - strandat 245.302 kb on + strandat 245.302 kb on + strandat 245.302 kb on + strandat 245.302 kb on + strandat 245.338 kb on + strand, within GFF2007at 245.338 kb on + strand, within GFF2007at 245.339 kb on - strand, within GFF2007at 245.407 kb on + strand, within GFF2007at 245.407 kb on + strand, within GFF2007at 245.407 kb on + strand, within GFF2007at 245.408 kb on - strand, within GFF2007at 245.439 kb on + strand, within GFF2007at 245.439 kb on + strand, within GFF2007at 245.439 kb on + strand, within GFF2007at 245.439 kb on + strand, within GFF2007at 245.439 kb on + strand, within GFF2007at 245.440 kb on - strand, within GFF2007at 245.440 kb on - strand, within GFF2007at 245.440 kb on - strand, within GFF2007at 245.440 kb on - strand, within GFF2007at 245.506 kb on + strand, within GFF2007at 245.507 kb on - strand, within GFF2007at 245.507 kb on - strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.518 kb on + strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.519 kb on - strand, within GFF2007at 245.615 kb on - strand, within GFF2007at 245.615 kb on - strand, within GFF2007at 245.934 kb on - strand, within GFF2007at 246.349 kb on + strand, within GFF2007at 246.418 kb on + strand, within GFF2007at 246.418 kb on + strand, within GFF2007at 246.419 kb on - strand, within GFF2007at 246.419 kb on - strand, within GFF2007at 246.500 kb on + strand, within GFF2007at 246.856 kb on - strand, within GFF2008at 247.047 kb on + strand, within GFF2008at 247.048 kb on - strand, within GFF2008at 247.144 kb on - strand, within GFF2008at 247.171 kb on - strand, within GFF2008at 247.638 kb on - strand, within GFF2009at 247.746 kb on - strand, within GFF2009

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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244,192 + +0.3
244,192 + +0.5
244,196 + +0.9
244,233 + +1.6
244,240 + +0.8
244,379 + GFF2006 0.36 -0.1
244,379 + GFF2006 0.36 -0.4
244,379 + GFF2006 0.36 -1.0
244,379 + GFF2006 0.36 -1.0
244,379 + GFF2006 0.36 -0.4
244,379 + GFF2006 0.36 -0.3
244,380 - GFF2006 0.36 -1.4
244,380 - GFF2006 0.36 +1.2
244,380 - GFF2006 0.36 -0.0
244,380 - GFF2006 0.36 +0.2
244,380 - GFF2006 0.36 -0.4
244,380 - GFF2006 0.36 +0.2
244,380 - GFF2006 0.36 -0.7
244,380 - GFF2006 0.36 +0.6
244,380 - GFF2006 0.36 +0.4
244,380 - GFF2006 0.36 +1.2
244,383 - GFF2006 0.36 -0.2
244,383 - GFF2006 0.36 -0.3
244,383 - GFF2006 0.36 +0.0
244,383 - GFF2006 0.36 +0.3
244,490 + GFF2006 0.57 +0.1
244,491 - GFF2006 0.57 +0.8
244,491 - GFF2006 0.57 +0.9
244,619 + GFF2006 0.82 +2.6
244,619 + GFF2006 0.82 -0.1
244,620 - GFF2006 0.82 +0.4
244,620 - GFF2006 0.82 +0.1
244,620 - GFF2006 0.82 +0.1
244,620 - GFF2006 0.82 +1.0
244,620 - GFF2006 0.82 -0.8
244,620 - GFF2006 0.82 -0.1
244,620 - GFF2006 0.82 +0.6
244,694 + +1.1
244,694 + -0.5
244,694 + -0.2
244,694 + -0.1
244,694 + +1.6
244,694 + +0.5
244,694 + -0.6
244,694 + -0.6
244,694 + -1.1
244,694 + +1.0
244,694 + -0.8
244,694 + -1.1
244,694 + +0.7
244,694 + -1.0
244,694 + -0.6
244,694 + +0.8
244,694 + +0.1
244,694 + -0.6
244,694 + +0.1
244,694 + +1.7
244,694 + -1.0
244,694 + +0.5
244,694 + -0.3
244,695 - -0.9
244,695 - -0.8
244,695 - -0.9
244,695 - +0.3
244,695 - +0.3
244,695 - -1.1
244,695 - -0.6
244,695 - +0.1
244,695 - -0.2
244,731 - -1.4
244,731 - +0.6
244,736 + +0.3
244,833 + +0.0
244,962 + -0.6
244,963 - +0.0
244,963 - +0.6
245,087 + -0.9
245,087 + -0.8
245,087 + +1.1
245,088 - +0.6
245,088 - -0.4
245,089 + +0.2
245,090 - +0.1
245,111 + +0.0
245,111 + -0.3
245,113 + +1.0
245,113 + +0.1
245,114 - -0.5
245,114 - +0.2
245,114 - +0.5
245,299 + -0.1
245,300 - +0.1
245,302 + +0.6
245,302 + -1.3
245,302 + -0.2
245,302 + +0.8
245,338 + GFF2007 0.12 +1.8
245,338 + GFF2007 0.12 -0.1
245,339 - GFF2007 0.12 +0.1
245,407 + GFF2007 0.16 +0.6
245,407 + GFF2007 0.16 +0.5
245,407 + GFF2007 0.16 -0.2
245,408 - GFF2007 0.16 -0.4
245,439 + GFF2007 0.18 -0.4
245,439 + GFF2007 0.18 +0.2
245,439 + GFF2007 0.18 -0.7
245,439 + GFF2007 0.18 -0.4
245,439 + GFF2007 0.18 -0.2
245,440 - GFF2007 0.18 +1.1
245,440 - GFF2007 0.18 +0.1
245,440 - GFF2007 0.18 -0.4
245,440 - GFF2007 0.18 -1.4
245,506 + GFF2007 0.22 -0.4
245,507 - GFF2007 0.22 -0.3
245,507 - GFF2007 0.22 -0.9
245,518 + GFF2007 0.23 -0.3
245,518 + GFF2007 0.23 +0.4
245,518 + GFF2007 0.23 -1.0
245,518 + GFF2007 0.23 +0.1
245,518 + GFF2007 0.23 -0.1
245,518 + GFF2007 0.23 -1.3
245,518 + GFF2007 0.23 +0.4
245,518 + GFF2007 0.23 +0.2
245,518 + GFF2007 0.23 +0.3
245,519 - GFF2007 0.23 -0.1
245,519 - GFF2007 0.23 +0.0
245,519 - GFF2007 0.23 +0.8
245,519 - GFF2007 0.23 -0.4
245,519 - GFF2007 0.23 -0.8
245,519 - GFF2007 0.23 -0.0
245,519 - GFF2007 0.23 -0.2
245,615 - GFF2007 0.29 -0.8
245,615 - GFF2007 0.29 +0.7
245,934 - GFF2007 0.48 +0.2
246,349 + GFF2007 0.74 +0.8
246,418 + GFF2007 0.78 -0.2
246,418 + GFF2007 0.78 -0.8
246,419 - GFF2007 0.78 +0.9
246,419 - GFF2007 0.78 +0.1
246,500 + GFF2007 0.83 +0.6
246,856 - GFF2008 0.16 -0.4
247,047 + GFF2008 0.51 +0.6
247,048 - GFF2008 0.52 -0.1
247,144 - GFF2008 0.69 +0.2
247,171 - GFF2008 0.74 -0.6
247,638 - GFF2009 0.26 -0.2
247,746 - GFF2009 0.35 +0.0

Or see this region's nucleotide sequence