Strain Fitness in Pseudomonas sp. DMC3 around GFF1659

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1658 and GFF1659 are separated by 409 nucleotidesGFF1659 and GFF1660 are separated by 0 nucleotidesGFF1660 and GFF1661 are separated by 80 nucleotidesGFF1661 and GFF1662 are separated by 160 nucleotides GFF1658 - Phosphatidylcholine synthase, at 445,919 to 446,641 GFF1658 GFF1659 - Multifunctional non-homologous end joining protein LigD, at 447,051 to 449,711 GFF1659 GFF1660 - hypothetical protein, at 449,712 to 450,110 GFF1660 GFF1661 - hypothetical protein, at 450,191 to 450,505 GFF1661 GFF1662 - Inner membrane protein YjdF, at 450,666 to 451,319 GFF1662 Position (kb) 447 448 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 446.179 kb on + strand, within GFF1658at 446.180 kb on - strand, within GFF1658at 446.180 kb on - strand, within GFF1658at 446.205 kb on + strand, within GFF1658at 446.205 kb on + strand, within GFF1658at 446.205 kb on + strand, within GFF1658at 446.206 kb on - strand, within GFF1658at 446.206 kb on - strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.253 kb on + strand, within GFF1658at 446.254 kb on - strand, within GFF1658at 446.254 kb on - strand, within GFF1658at 446.254 kb on - strand, within GFF1658at 446.254 kb on - strand, within GFF1658at 446.337 kb on + strand, within GFF1658at 446.337 kb on + strand, within GFF1658at 446.338 kb on - strand, within GFF1658at 446.356 kb on - strand, within GFF1658at 446.361 kb on + strand, within GFF1658at 446.361 kb on + strand, within GFF1658at 446.365 kb on + strand, within GFF1658at 446.366 kb on - strand, within GFF1658at 446.384 kb on + strand, within GFF1658at 446.384 kb on + strand, within GFF1658at 446.384 kb on + strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.385 kb on - strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.388 kb on + strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.389 kb on - strand, within GFF1658at 446.397 kb on + strand, within GFF1658at 446.627 kb on + strandat 446.627 kb on + strandat 446.627 kb on + strandat 446.628 kb on - strandat 446.628 kb on - strandat 446.628 kb on - strandat 446.636 kb on + strandat 446.637 kb on - strandat 446.768 kb on + strandat 446.768 kb on + strandat 446.857 kb on - strandat 446.857 kb on - strandat 446.892 kb on - strandat 446.927 kb on + strandat 446.928 kb on - strandat 446.942 kb on + strandat 446.942 kb on + strandat 446.943 kb on - strandat 447.021 kb on + strandat 447.072 kb on + strandat 447.072 kb on + strandat 447.073 kb on - strandat 447.198 kb on + strandat 447.198 kb on + strandat 447.198 kb on + strandat 447.199 kb on - strandat 447.199 kb on - strandat 447.199 kb on - strandat 447.420 kb on + strand, within GFF1659at 447.420 kb on + strand, within GFF1659at 447.420 kb on + strand, within GFF1659at 447.421 kb on - strand, within GFF1659at 447.488 kb on + strand, within GFF1659at 447.488 kb on + strand, within GFF1659at 447.789 kb on + strand, within GFF1659at 447.789 kb on + strand, within GFF1659at 447.790 kb on - strand, within GFF1659at 448.032 kb on + strand, within GFF1659at 448.032 kb on + strand, within GFF1659at 448.032 kb on + strand, within GFF1659at 448.033 kb on - strand, within GFF1659at 448.035 kb on + strand, within GFF1659at 448.035 kb on + strand, within GFF1659at 448.036 kb on - strand, within GFF1659at 448.036 kb on - strand, within GFF1659at 448.036 kb on - strand, within GFF1659at 448.053 kb on + strand, within GFF1659at 448.054 kb on - strand, within GFF1659at 448.054 kb on - strand, within GFF1659at 448.248 kb on + strand, within GFF1659at 448.248 kb on + strand, within GFF1659at 448.248 kb on + strand, within GFF1659at 448.248 kb on + strand, within GFF1659at 448.249 kb on - strand, within GFF1659at 448.249 kb on - strand, within GFF1659at 448.249 kb on - strand, within GFF1659at 448.253 kb on - strand, within GFF1659at 448.253 kb on - strand, within GFF1659at 448.253 kb on - strand, within GFF1659at 448.253 kb on - strand, within GFF1659at 448.320 kb on + strand, within GFF1659at 448.646 kb on + strand, within GFF1659at 448.840 kb on + strand, within GFF1659at 448.840 kb on + strand, within GFF1659at 448.841 kb on - strand, within GFF1659at 448.841 kb on - strand, within GFF1659at 448.841 kb on - strand, within GFF1659at 448.841 kb on - strand, within GFF1659at 448.848 kb on - strand, within GFF1659at 448.848 kb on - strand, within GFF1659at 448.908 kb on + strand, within GFF1659at 448.908 kb on + strand, within GFF1659at 448.908 kb on + strand, within GFF1659at 448.911 kb on + strand, within GFF1659at 448.911 kb on + strand, within GFF1659at 448.911 kb on + strand, within GFF1659at 448.911 kb on + strand, within GFF1659at 448.912 kb on - strand, within GFF1659at 448.912 kb on - strand, within GFF1659at 448.912 kb on - strand, within GFF1659at 448.912 kb on - strand, within GFF1659at 448.929 kb on + strand, within GFF1659at 448.929 kb on + strand, within GFF1659at 448.930 kb on - strand, within GFF1659at 449.042 kb on + strand, within GFF1659at 449.043 kb on - strand, within GFF1659at 449.043 kb on - strand, within GFF1659at 449.050 kb on + strand, within GFF1659at 449.051 kb on - strand, within GFF1659at 449.051 kb on - strand, within GFF1659at 449.153 kb on + strand, within GFF1659at 449.153 kb on + strand, within GFF1659at 449.154 kb on - strand, within GFF1659at 449.154 kb on - strand, within GFF1659at 449.154 kb on - strand, within GFF1659at 449.414 kb on + strand, within GFF1659at 449.505 kb on + strandat 449.598 kb on + strandat 449.598 kb on + strandat 449.599 kb on - strandat 449.599 kb on - strandat 449.599 kb on - strandat 449.920 kb on + strand, within GFF1660at 449.920 kb on + strand, within GFF1660at 449.921 kb on - strand, within GFF1660at 449.921 kb on - strand, within GFF1660at 449.921 kb on - strand, within GFF1660at 449.921 kb on - strand, within GFF1660at 449.921 kb on - strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.924 kb on + strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 449.925 kb on - strand, within GFF1660at 450.093 kb on + strandat 450.122 kb on + strandat 450.123 kb on - strandat 450.147 kb on - strandat 450.192 kb on + strandat 450.210 kb on + strandat 450.287 kb on + strand, within GFF1661at 450.475 kb on + strandat 450.475 kb on + strandat 450.475 kb on + strandat 450.476 kb on - strandat 450.494 kb on + strandat 450.495 kb on - strandat 450.495 kb on - strandat 450.547 kb on + strandat 450.547 kb on + strandat 450.547 kb on + strandat 450.548 kb on - strandat 450.551 kb on + strandat 450.551 kb on + strandat 450.551 kb on + strandat 450.551 kb on + strandat 450.552 kb on - strandat 450.552 kb on - strandat 450.552 kb on - strandat 450.552 kb on - strandat 450.552 kb on - strandat 450.600 kb on + strandat 450.601 kb on - strandat 450.648 kb on - strandat 450.707 kb on + strandat 450.707 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
446,179 + GFF1658 0.36 +1.3
446,180 - GFF1658 0.36 -0.2
446,180 - GFF1658 0.36 +0.3
446,205 + GFF1658 0.40 +0.2
446,205 + GFF1658 0.40 -0.3
446,205 + GFF1658 0.40 +0.1
446,206 - GFF1658 0.40 -0.1
446,206 - GFF1658 0.40 +0.0
446,253 + GFF1658 0.46 +1.0
446,253 + GFF1658 0.46 -0.6
446,253 + GFF1658 0.46 -0.5
446,253 + GFF1658 0.46 -1.6
446,253 + GFF1658 0.46 -0.6
446,253 + GFF1658 0.46 +0.2
446,254 - GFF1658 0.46 -0.0
446,254 - GFF1658 0.46 +0.2
446,254 - GFF1658 0.46 +0.9
446,254 - GFF1658 0.46 -0.6
446,337 + GFF1658 0.58 -2.2
446,337 + GFF1658 0.58 -2.3
446,338 - GFF1658 0.58 -0.4
446,356 - GFF1658 0.60 -2.8
446,361 + GFF1658 0.61 +0.9
446,361 + GFF1658 0.61 -0.5
446,365 + GFF1658 0.62 +1.3
446,366 - GFF1658 0.62 -0.6
446,384 + GFF1658 0.64 -0.0
446,384 + GFF1658 0.64 +0.1
446,384 + GFF1658 0.64 -0.2
446,385 - GFF1658 0.64 -1.0
446,385 - GFF1658 0.64 -0.3
446,385 - GFF1658 0.64 +1.6
446,385 - GFF1658 0.64 +0.2
446,385 - GFF1658 0.64 -0.7
446,385 - GFF1658 0.64 -0.4
446,385 - GFF1658 0.64 +0.1
446,385 - GFF1658 0.64 +0.5
446,385 - GFF1658 0.64 +0.2
446,388 + GFF1658 0.65 +0.1
446,388 + GFF1658 0.65 +0.1
446,388 + GFF1658 0.65 -0.7
446,388 + GFF1658 0.65 -0.3
446,388 + GFF1658 0.65 -0.7
446,388 + GFF1658 0.65 -0.7
446,388 + GFF1658 0.65 -0.1
446,389 - GFF1658 0.65 +0.3
446,389 - GFF1658 0.65 -0.1
446,389 - GFF1658 0.65 +1.1
446,389 - GFF1658 0.65 +1.4
446,389 - GFF1658 0.65 +0.7
446,389 - GFF1658 0.65 -1.0
446,389 - GFF1658 0.65 +0.3
446,389 - GFF1658 0.65 +1.3
446,389 - GFF1658 0.65 +1.0
446,389 - GFF1658 0.65 +0.8
446,397 + GFF1658 0.66 -0.1
446,627 + -0.8
446,627 + -0.5
446,627 + -0.4
446,628 - +1.8
446,628 - -1.5
446,628 - +0.5
446,636 + -0.4
446,637 - -1.0
446,768 + +0.3
446,768 + +0.4
446,857 - +0.5
446,857 - -1.5
446,892 - +0.6
446,927 + +1.4
446,928 - -0.4
446,942 + +1.1
446,942 + -0.1
446,943 - -0.8
447,021 + -1.2
447,072 + -0.9
447,072 + +0.0
447,073 - -0.6
447,198 + -0.8
447,198 + +0.2
447,198 + +0.1
447,199 - +0.9
447,199 - -1.5
447,199 - -0.8
447,420 + GFF1659 0.14 -0.2
447,420 + GFF1659 0.14 -1.3
447,420 + GFF1659 0.14 +0.5
447,421 - GFF1659 0.14 +0.1
447,488 + GFF1659 0.16 -1.1
447,488 + GFF1659 0.16 -0.2
447,789 + GFF1659 0.28 -0.7
447,789 + GFF1659 0.28 -0.9
447,790 - GFF1659 0.28 +0.2
448,032 + GFF1659 0.37 -0.7
448,032 + GFF1659 0.37 +0.1
448,032 + GFF1659 0.37 -0.7
448,033 - GFF1659 0.37 +0.1
448,035 + GFF1659 0.37 -1.0
448,035 + GFF1659 0.37 -1.1
448,036 - GFF1659 0.37 -1.4
448,036 - GFF1659 0.37 -0.4
448,036 - GFF1659 0.37 -0.1
448,053 + GFF1659 0.38 +0.6
448,054 - GFF1659 0.38 -1.3
448,054 - GFF1659 0.38 -1.2
448,248 + GFF1659 0.45 +0.0
448,248 + GFF1659 0.45 -1.0
448,248 + GFF1659 0.45 +0.3
448,248 + GFF1659 0.45 -0.1
448,249 - GFF1659 0.45 -0.8
448,249 - GFF1659 0.45 -0.5
448,249 - GFF1659 0.45 -3.6
448,253 - GFF1659 0.45 +0.8
448,253 - GFF1659 0.45 -0.7
448,253 - GFF1659 0.45 +1.3
448,253 - GFF1659 0.45 -2.3
448,320 + GFF1659 0.48 -0.9
448,646 + GFF1659 0.60 -1.0
448,840 + GFF1659 0.67 -0.7
448,840 + GFF1659 0.67 +0.1
448,841 - GFF1659 0.67 -1.2
448,841 - GFF1659 0.67 +0.0
448,841 - GFF1659 0.67 +0.2
448,841 - GFF1659 0.67 +0.6
448,848 - GFF1659 0.68 -0.0
448,848 - GFF1659 0.68 -0.7
448,908 + GFF1659 0.70 -0.5
448,908 + GFF1659 0.70 -0.0
448,908 + GFF1659 0.70 -0.2
448,911 + GFF1659 0.70 +1.9
448,911 + GFF1659 0.70 +1.5
448,911 + GFF1659 0.70 -1.5
448,911 + GFF1659 0.70 +0.3
448,912 - GFF1659 0.70 -1.2
448,912 - GFF1659 0.70 +0.6
448,912 - GFF1659 0.70 -1.7
448,912 - GFF1659 0.70 -1.1
448,929 + GFF1659 0.71 -0.6
448,929 + GFF1659 0.71 -1.3
448,930 - GFF1659 0.71 -0.0
449,042 + GFF1659 0.75 +0.6
449,043 - GFF1659 0.75 +0.0
449,043 - GFF1659 0.75 -0.5
449,050 + GFF1659 0.75 -0.1
449,051 - GFF1659 0.75 -0.4
449,051 - GFF1659 0.75 -2.3
449,153 + GFF1659 0.79 +0.6
449,153 + GFF1659 0.79 +0.1
449,154 - GFF1659 0.79 -0.7
449,154 - GFF1659 0.79 +0.6
449,154 - GFF1659 0.79 -0.3
449,414 + GFF1659 0.89 -0.5
449,505 + +0.9
449,598 + +1.3
449,598 + -0.9
449,599 - +1.3
449,599 - -0.8
449,599 - -0.9
449,920 + GFF1660 0.52 +0.3
449,920 + GFF1660 0.52 +0.9
449,921 - GFF1660 0.52 +0.7
449,921 - GFF1660 0.52 +1.1
449,921 - GFF1660 0.52 -0.5
449,921 - GFF1660 0.52 +0.1
449,921 - GFF1660 0.52 +0.5
449,924 + GFF1660 0.53 -1.0
449,924 + GFF1660 0.53 -2.0
449,924 + GFF1660 0.53 +1.3
449,924 + GFF1660 0.53 -0.0
449,924 + GFF1660 0.53 -0.3
449,924 + GFF1660 0.53 -0.2
449,924 + GFF1660 0.53 -1.9
449,925 - GFF1660 0.53 -1.7
449,925 - GFF1660 0.53 -0.5
449,925 - GFF1660 0.53 +0.7
449,925 - GFF1660 0.53 -0.2
449,925 - GFF1660 0.53 -0.4
449,925 - GFF1660 0.53 +0.4
449,925 - GFF1660 0.53 +1.3
449,925 - GFF1660 0.53 +0.5
449,925 - GFF1660 0.53 +1.0
449,925 - GFF1660 0.53 +0.5
449,925 - GFF1660 0.53 -0.9
449,925 - GFF1660 0.53 +1.4
450,093 + +0.3
450,122 + +1.5
450,123 - -1.1
450,147 - +0.5
450,192 + +0.8
450,210 + +0.0
450,287 + GFF1661 0.30 +0.7
450,475 + -0.7
450,475 + -0.7
450,475 + +0.5
450,476 - -0.4
450,494 + -0.7
450,495 - -0.4
450,495 - -0.1
450,547 + -0.2
450,547 + -0.5
450,547 + -0.3
450,548 - -0.7
450,551 + +0.3
450,551 + -0.1
450,551 + -1.5
450,551 + -0.9
450,552 - -0.3
450,552 - -1.2
450,552 - -1.1
450,552 - -0.6
450,552 - +0.5
450,600 + +0.9
450,601 - -1.0
450,648 - +2.0
450,707 + -0.1
450,707 + -0.7

Or see this region's nucleotide sequence